Dr. Chen has been leading the collaborative efforts to drive personalized medicine and clinical diagnosis using genome and exome sequencing and integrative genomics as a Director of Clinical Genome Informatics at Icahn School of Medicine at Mount Sinai since 2013, Director of Predictive Medicine at Personalis from 2011-2013, and Research Scientist at Stanford University from 2005-2011.
He has published over 60 papers in Lancet, Cell, Nature Biotechnology, Nature Methods, PNAS, AJHG, PLoS Genetics, PLoS Computational Biology, Genome Research, Genome Biology, Genome Medicine, AJT, and Proteins. He has alos invented numerous patents, software,and databses on personalized medicine, diagnosis, and structure modeling.
Our reseach focuses on translational bioinformatics, integrating genomic, genetic, phenotypic, clinical, and environmental data to identify diagnostics biomarkers and therapeutical drugs, and drive personalized medicine.
We have been working on translational bioinformatics and personlized medicine from four directions. The first is to integrate genome sequencing, exome sequencing, and RNA-Seq data to drive personalized cancer therapy. The second is to predict personal risk of disease through integrating geome sequencing, electronic medical records, and environmental factors. Third, we have been developing methods to integrate and translate various molecular measurements in the public repositories into biomarkers for the diagnosis of disease.Last, we have been working on the discovery of causal variants, pathway, and mechanism to illustrate human disease through integrative genomics.
Our lab is a place with great people doing great research in one of the greatest cities on the world. Come join us! We have the following positions available:
Patel CJ, Sivadas A, Tabassum R, Preeprem T, Zhao J, Arafat D, Chen R, Morgan AA, Martin GS, Brigham KL, Butte AJ, Gibson G. Whole genome sequencing in support of wellness and health maintenance. Genome Med 2013 Jun27; 5(6):58.
Hsu I, Chen R, Ramesh A, Corona E, Kang HP, Ruau D, Butte AJ. Systematic identification of DNA variants associated with ultraviolet radiation using a novel Geographic-Wide Association Study (GeoWAS). BMC Med Genet. 2013 Jun 20;14(1):62
Corona E, Chen R, Sikora M, Morgan AA, Patel CJ, Ramesh A, Bustamante CD, Butte AJ. Analysis of the genetic basis of disease in the context of worldwide human relationships and migration. PLoS Genet. 2013 May;9(5):e1003447
Karczewski KJ, Dudley JT, Kukurba KR, Chen R, Butte AJ, Montgomery SB, Snyder M.Systematic functional regulatory assessment of disease-associated variants. Proc Natl Acad Sci U S A. 2013 Jun 4;110(23):9607-12.
Sigdel TK, Shoemaker LD, Chen R, Li L, Butte AJ, Sarwal MM, Steinberg GK. Immune response profiling identifies autoantibodies specific to Moyamoya patients. Orphanet J Rare Dis. 2013 Mar 21;8:45.
Patel CJ, Chen R, Kodama K, Ioannidis JP, Butte AJ. Systematic identification of interaction effects between genome- and environment-wide associations in type 2 diabetes mellitus. Hum Genet. 2013 May;132(5):495-508.