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Transposon Analysis
Cluster Browser
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Clusters containing Tandem Repeats
| chr1:18009084-18017953 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 18009084 |
18009282 |
+ |
22.5 |
1735 |
1939 |
-1480 |
L2 |
L2 |
LINE |
| 18009303 |
18009606 |
- |
28.3 |
7684 |
8013 |
-29 |
L1MC4 |
L1 |
LINE |
| 18009623 |
18010943 |
- |
22.2 |
4754 |
6142 |
-24 |
L1ME1 |
L1 |
LINE |
| 18010944 |
18011239 |
- |
15.3 |
1 |
306 |
-6 |
AluJb |
Alu |
SINE |
| 18011240 |
18011499 |
- |
22.5 |
4509 |
4753 |
-1393 |
L1MD |
L1 |
LINE |
| 18011500 |
18011746 |
- |
11.0 |
76 |
312 |
0 |
AluSg/x |
Alu |
SINE |
| 18011747 |
18011874 |
- |
13.3 |
1 |
129 |
-183 |
AluSq/x |
Alu |
SINE |
| 18011875 |
18013169 |
- |
22.5 |
3154 |
4508 |
-1638 |
L1MD |
L1 |
LINE |
| 18013175 |
18013295 |
+ |
14.1 |
1 |
132 |
-214 |
MER7A |
MER2_type |
DNA |
| 18013298 |
18013427 |
+ |
23.9 |
2 |
132 |
-11 |
FLAM_C |
Alu |
SINE |
| 18013429 |
18013514 |
+ |
17.4 |
2806 |
2894 |
-135 |
Tigger3(Golem) |
MER2_type |
DNA |
| 18013532 |
18013601 |
+ |
17.1 |
2806 |
2877 |
-152 |
Tigger3(Golem) |
MER2_type |
DNA |
| 18013633 |
18013704 |
+ |
16.7 |
2806 |
2877 |
-152 |
Tigger3(Golem) |
MER2_type |
DNA |
| 18013736 |
18013807 |
+ |
15.3 |
2806 |
2877 |
-152 |
Tigger3(Golem) |
MER2_type |
DNA |
| 18013839 |
18013910 |
+ |
9.7 |
2806 |
2877 |
-152 |
Tigger3(Golem) |
MER2_type |
DNA |
| 18013942 |
18014013 |
+ |
12.5 |
2806 |
2877 |
-152 |
Tigger3(Golem) |
MER2_type |
DNA |
| 18014035 |
18014106 |
+ |
15.3 |
2806 |
2877 |
-152 |
Tigger3(Golem) |
MER2_type |
DNA |
| 18014138 |
18014258 |
+ |
12.4 |
2806 |
2926 |
-103 |
Tigger3(Golem) |
MER2_type |
DNA |
| 18014259 |
18015014 |
- |
23.7 |
1389 |
2171 |
-4469 |
L1MEa |
L1 |
LINE |
| 18015044 |
18015272 |
- |
21.8 |
6057 |
6291 |
0 |
L1MA7 |
L1 |
LINE |
| 18015283 |
18015585 |
- |
16.2 |
1 |
298 |
-14 |
AluJb |
Alu |
SINE |
| 18015625 |
18015834 |
- |
24.1 |
851 |
1067 |
-5480 |
L1MEa |
L1 |
LINE |
| 18015837 |
18016165 |
- |
21.8 |
521 |
853 |
-5681 |
L1MEa |
L1 |
LINE |
| 18016285 |
18016424 |
- |
27.3 |
7518 |
7678 |
-364 |
L1MC4 |
L1 |
LINE |
| 18016425 |
18016772 |
+ |
29.6 |
1927 |
2304 |
-1115 |
L2 |
L2 |
LINE |
| 18016773 |
18017083 |
- |
10.6 |
1 |
310 |
-2 |
AluSx |
Alu |
SINE |
| 18017084 |
18017953 |
+ |
30.2 |
2305 |
3325 |
-94 |
L2 |
L2 |
LINE |
| chr1:91900472-91910675 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 91900472 |
91900588 |
- |
26.3 |
3297 |
3414 |
-5 |
L2 |
L2 |
LINE |
| 91900596 |
91901056 |
- |
5.9 |
1 |
463 |
0 |
LTR2 |
ERV1 |
LTR |
| 91901057 |
91906145 |
- |
6.6 |
1806 |
6896 |
0 |
Harlequin |
ERV1 |
LTR |
| 91906127 |
91906217 |
- |
5.9 |
1333 |
1422 |
-5474 |
Harlequin |
ERV1 |
LTR |
| 91906244 |
91906788 |
- |
5.9 |
770 |
1332 |
-5564 |
Harlequin |
ERV1 |
LTR |
| 91906821 |
91906860 |
- |
10.0 |
769 |
808 |
-6088 |
Harlequin |
ERV1 |
LTR |
| 91906857 |
91906896 |
- |
10.0 |
769 |
808 |
-6088 |
Harlequin |
ERV1 |
LTR |
| 91906893 |
91906932 |
- |
10.0 |
769 |
808 |
-6088 |
Harlequin |
ERV1 |
LTR |
| 91906929 |
91906968 |
- |
10.0 |
769 |
808 |
-6088 |
Harlequin |
ERV1 |
LTR |
| 91906965 |
91907005 |
- |
14.6 |
765 |
805 |
-7008 |
Harlequin |
ERV1 |
LTR |
| 91907001 |
91907040 |
- |
10.0 |
769 |
808 |
-6088 |
Harlequin |
ERV1 |
LTR |
| 91907037 |
91907076 |
- |
10.0 |
769 |
808 |
-6088 |
Harlequin |
ERV1 |
LTR |
| 91907073 |
91907112 |
- |
7.5 |
769 |
808 |
-6088 |
Harlequin |
ERV1 |
LTR |
| 91907109 |
91907148 |
- |
7.5 |
769 |
808 |
-6088 |
Harlequin |
ERV1 |
LTR |
| 91907145 |
91907180 |
- |
8.3 |
773 |
808 |
-6088 |
Harlequin |
ERV1 |
LTR |
| 91907181 |
91907220 |
- |
10.0 |
769 |
808 |
-6088 |
Harlequin |
ERV1 |
LTR |
| 91907217 |
91907256 |
- |
7.5 |
769 |
808 |
-6088 |
Harlequin |
ERV1 |
LTR |
| 91907253 |
91907292 |
- |
7.5 |
769 |
808 |
-6088 |
Harlequin |
ERV1 |
LTR |
| 91907289 |
91907328 |
- |
10.0 |
769 |
808 |
-6088 |
Harlequin |
ERV1 |
LTR |
| 91907325 |
91907364 |
- |
10.0 |
769 |
808 |
-6088 |
Harlequin |
ERV1 |
LTR |
| 91907361 |
91907400 |
- |
10.0 |
769 |
808 |
-6088 |
Harlequin |
ERV1 |
LTR |
| 91907397 |
91907436 |
- |
10.0 |
769 |
808 |
-6088 |
Harlequin |
ERV1 |
LTR |
| 91907433 |
91907472 |
- |
10.0 |
769 |
808 |
-6088 |
Harlequin |
ERV1 |
LTR |
| 91907469 |
91907508 |
- |
7.5 |
769 |
808 |
-6088 |
Harlequin |
ERV1 |
LTR |
| 91907505 |
91908049 |
- |
6.3 |
263 |
808 |
-6088 |
Harlequin |
ERV1 |
LTR |
| 91908043 |
91908432 |
- |
12.7 |
1 |
387 |
-6509 |
Harlequin |
ERV1 |
LTR |
| 91908433 |
91908892 |
- |
8.3 |
1 |
463 |
0 |
LTR2 |
ERV1 |
LTR |
| 91908903 |
91909218 |
- |
28.8 |
2959 |
3289 |
-130 |
L2 |
L2 |
LINE |
| 91909266 |
91909766 |
+ |
25.6 |
5254 |
5762 |
-2046 |
L1MC4a |
L1 |
LINE |
| 91909767 |
91910076 |
+ |
12.9 |
1 |
310 |
0 |
AluSg |
Alu |
SINE |
| 91910077 |
91910329 |
+ |
25.6 |
5763 |
6030 |
-1778 |
L1MC4a |
L1 |
LINE |
| 91910392 |
91910675 |
- |
30.3 |
2572 |
2885 |
-534 |
L2 |
L2 |
LINE |
| chr1:245878999-245880437 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 245878999 |
245879154 |
- |
11.5 |
745 |
903 |
0 |
MER4D |
ERV1 |
LTR |
| 245879151 |
245879256 |
- |
10.4 |
714 |
800 |
-103 |
MER4D |
ERV1 |
LTR |
| 245879252 |
245879306 |
- |
12.7 |
509 |
564 |
-100 |
MER4A |
ERV1 |
LTR |
| 245879304 |
245879358 |
- |
10.9 |
714 |
769 |
-103 |
MER4D0 |
ERV1 |
LTR |
| 245879359 |
245879405 |
- |
10.6 |
718 |
765 |
-107 |
MER4D0 |
ERV1 |
LTR |
| 245879406 |
245879460 |
- |
9.1 |
714 |
769 |
-103 |
MER4D0 |
ERV1 |
LTR |
| 245879461 |
245879562 |
- |
12.3 |
714 |
796 |
-107 |
MER4D0 |
ERV1 |
LTR |
| 245879559 |
245879613 |
- |
12.7 |
714 |
769 |
-103 |
MER4D0 |
ERV1 |
LTR |
| 245879617 |
245879661 |
- |
15.6 |
718 |
762 |
-110 |
MER4D0 |
ERV1 |
LTR |
| 245879662 |
245880437 |
- |
13.5 |
1 |
800 |
-103 |
MER4D |
ERV1 |
LTR |
| chr2:95860533-95865476 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 95860533 |
95861233 |
+ |
20.5 |
5 |
1166 |
-5815 |
L1PA12 |
L1 |
LINE |
| 95861238 |
95861516 |
- |
23.6 |
802 |
1090 |
-5891 |
L1PA10 |
L1 |
LINE |
| 95861520 |
95861636 |
- |
25.5 |
793 |
900 |
-6081 |
L1PA10 |
L1 |
LINE |
| 95861749 |
95861838 |
- |
17.8 |
814 |
904 |
-6077 |
L1PA10 |
L1 |
LINE |
| 95861852 |
95861939 |
- |
23.9 |
815 |
903 |
-6078 |
L1PA10 |
L1 |
LINE |
| 95861953 |
95862071 |
- |
22.9 |
793 |
903 |
-6078 |
L1PA10 |
L1 |
LINE |
| 95862067 |
95862155 |
- |
23.9 |
814 |
901 |
-6080 |
L1PA10 |
L1 |
LINE |
| 95862169 |
95862662 |
- |
22.7 |
799 |
1174 |
-5807 |
L1PA12 |
L1 |
LINE |
| 95862682 |
95862764 |
- |
15.7 |
815 |
897 |
-6084 |
L1PA12 |
L1 |
LINE |
| 95862779 |
95862864 |
- |
15.1 |
814 |
903 |
-6078 |
L1PA12 |
L1 |
LINE |
| 95862889 |
95862980 |
- |
25.0 |
799 |
892 |
-6089 |
L1PA12 |
L1 |
LINE |
| 95862981 |
95863083 |
- |
22.6 |
798 |
904 |
-6077 |
L1PA12 |
L1 |
LINE |
| 95863087 |
95863398 |
- |
25.7 |
799 |
1169 |
-5812 |
L1PA12 |
L1 |
LINE |
| 95863399 |
95863512 |
- |
25.0 |
798 |
903 |
-6078 |
L1PA12 |
L1 |
LINE |
| 95863513 |
95863601 |
- |
21.6 |
814 |
901 |
-6080 |
L1PA12 |
L1 |
LINE |
| 95863615 |
95863914 |
- |
25.3 |
814 |
1174 |
-5807 |
L1PA12 |
L1 |
LINE |
| 95863931 |
95864031 |
- |
22.0 |
799 |
900 |
-6081 |
L1PA12 |
L1 |
LINE |
| 95864032 |
95864434 |
- |
24.4 |
810 |
1174 |
-5807 |
L1PA12 |
L1 |
LINE |
| 95864444 |
95864507 |
- |
20.3 |
838 |
904 |
-6077 |
L1PA12 |
L1 |
LINE |
| 95864506 |
95865476 |
+ |
24.8 |
734 |
1627 |
-5890 |
L1PA12 |
L1 |
LINE |
| chr2:114082492-114085741 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 114082492 |
114082603 |
+ |
23.6 |
500 |
623 |
-4733 |
MER31-int |
ERV1 |
LTR |
| 114082645 |
114082984 |
+ |
25.9 |
173 |
515 |
-4421 |
MER31-int |
ERV1 |
LTR |
| 114082960 |
114083323 |
+ |
26.7 |
620 |
1063 |
-3873 |
MER31-int |
ERV1 |
LTR |
| 114083330 |
114083680 |
- |
18.8 |
167 |
551 |
-3 |
MLT2B3 |
ERVL |
LTR |
| 114083681 |
114084042 |
- |
15.0 |
1 |
375 |
0 |
THE1C |
MaLR |
LTR |
| 114084043 |
114084269 |
- |
20.4 |
3 |
274 |
-388 |
MLT2B3 |
ERVL |
LTR |
| 114084295 |
114084362 |
- |
20.6 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 114084363 |
114084455 |
- |
21.6 |
3 |
96 |
-501 |
MLT2B3 |
ERVL |
LTR |
| 114084456 |
114084548 |
- |
21.6 |
3 |
96 |
-501 |
MLT2B3 |
ERVL |
LTR |
| 114084574 |
114084641 |
- |
19.1 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 114084667 |
114084734 |
- |
20.6 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 114084760 |
114084827 |
- |
19.1 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 114084853 |
114084920 |
- |
19.1 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 114084946 |
114085013 |
- |
22.1 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 114085039 |
114085106 |
- |
17.6 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 114085107 |
114085199 |
- |
16.1 |
3 |
97 |
-483 |
MLT2B3 |
ERVL |
LTR |
| 114085225 |
114085291 |
- |
22.4 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 114085295 |
114085741 |
+ |
21.6 |
1063 |
1506 |
-3430 |
MER31-int |
ERV1 |
LTR |
| chr2:128696761-128704217 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 128696761 |
128696830 |
- |
18.8 |
5749 |
5816 |
-817 |
L1M |
L1 |
LINE |
| 128696836 |
128696861 |
- |
15.5 |
401 |
423 |
-5 |
MSTC |
MaLR |
LTR |
| 128696862 |
128697276 |
- |
17.4 |
136 |
594 |
-1 |
LTR49 |
ERV1 |
LTR |
| 128697277 |
128697585 |
- |
10.9 |
1 |
309 |
0 |
AluSq |
Alu |
SINE |
| 128697586 |
128697724 |
- |
17.4 |
2 |
135 |
-460 |
LTR49 |
ERV1 |
LTR |
| 128697725 |
128697844 |
- |
15.5 |
284 |
400 |
-28 |
MSTC |
MaLR |
LTR |
| 128697848 |
128698064 |
- |
16.6 |
3907 |
4123 |
-2414 |
L1M |
L1 |
LINE |
| 128698065 |
128698366 |
- |
16.6 |
1 |
302 |
-10 |
AluJb |
Alu |
SINE |
| 128698393 |
128698528 |
- |
18.8 |
2 |
142 |
-1 |
FLAM_C |
Alu |
SINE |
| 128698530 |
128698679 |
- |
18.2 |
3394 |
3537 |
-3000 |
L1M |
L1 |
LINE |
| 128698680 |
128698979 |
+ |
10.0 |
1 |
299 |
-13 |
AluSx |
Alu |
SINE |
| 128698980 |
128699052 |
- |
18.2 |
3322 |
3393 |
-3144 |
L1M |
L1 |
LINE |
| 128699053 |
128699353 |
- |
9.3 |
1 |
302 |
-10 |
AluSx |
Alu |
SINE |
| 128699354 |
128699679 |
- |
18.2 |
2990 |
3321 |
-3216 |
L1M |
L1 |
LINE |
| 128699680 |
128699853 |
+ |
16.6 |
1 |
178 |
-250 |
MSTB |
MaLR |
LTR |
| 128699840 |
128699871 |
+ |
6.2 |
102 |
133 |
-324 |
MSTB2 |
MaLR |
LTR |
| 128699877 |
128699908 |
+ |
6.2 |
102 |
133 |
-324 |
MSTB2 |
MaLR |
LTR |
| 128699914 |
128699945 |
+ |
6.2 |
102 |
133 |
-324 |
MSTB2 |
MaLR |
LTR |
| 128699951 |
128699982 |
+ |
6.2 |
102 |
133 |
-324 |
MSTB2 |
MaLR |
LTR |
| 128699988 |
128700019 |
+ |
6.2 |
102 |
133 |
-324 |
MSTB2 |
MaLR |
LTR |
| 128700025 |
128700056 |
+ |
6.2 |
102 |
133 |
-324 |
MSTB2 |
MaLR |
LTR |
| 128700062 |
128700093 |
+ |
6.2 |
102 |
133 |
-324 |
MSTB2 |
MaLR |
LTR |
| 128700099 |
128700130 |
+ |
6.2 |
102 |
133 |
-324 |
MSTB2 |
MaLR |
LTR |
| 128700136 |
128700167 |
+ |
6.2 |
102 |
133 |
-324 |
MSTB |
MaLR |
LTR |
| 128700173 |
128700283 |
+ |
16.3 |
86 |
190 |
-236 |
MSTB |
MaLR |
LTR |
| 128700284 |
128700590 |
+ |
14.4 |
1 |
306 |
-6 |
AluJo |
Alu |
SINE |
| 128700591 |
128700824 |
+ |
16.3 |
191 |
426 |
0 |
MSTB |
MaLR |
LTR |
| 128700825 |
128701093 |
- |
13.9 |
2690 |
2994 |
-3543 |
L1M |
L1 |
LINE |
| 128701095 |
128701505 |
+ |
15.3 |
1 |
426 |
-2 |
MSTC |
MaLR |
LTR |
| 128701506 |
128701665 |
- |
15.2 |
2521 |
2689 |
-3848 |
L1M |
L1 |
LINE |
| 128701668 |
128701954 |
- |
10.1 |
24 |
310 |
-2 |
AluSx |
Alu |
SINE |
| 128701956 |
128702133 |
+ |
16.7 |
170 |
347 |
0 |
AluSg/x |
Alu |
SINE |
| 128702238 |
128702347 |
- |
21.7 |
2383 |
2498 |
-4135 |
L1M |
L1 |
LINE |
| 128702424 |
128702734 |
+ |
9.5 |
1 |
305 |
-6 |
AluY |
Alu |
SINE |
| 128702776 |
128702957 |
- |
21.7 |
2211 |
2387 |
-4246 |
L1M |
L1 |
LINE |
| 128702958 |
128703197 |
+ |
15.2 |
8 |
336 |
-1 |
MER7A |
MER2_type |
DNA |
| 128703198 |
128703317 |
- |
22.4 |
2075 |
2209 |
-4424 |
L1M |
L1 |
LINE |
| 128703318 |
128703623 |
- |
18.6 |
5 |
310 |
-2 |
AluSx |
Alu |
SINE |
| 128703624 |
128703691 |
- |
22.4 |
2013 |
2074 |
-4559 |
L1M |
L1 |
LINE |
| 128703692 |
128703981 |
- |
10.7 |
10 |
298 |
-12 |
AluSg |
Alu |
SINE |
| 128703982 |
128704217 |
- |
22.4 |
1789 |
2012 |
-4621 |
L1M |
L1 |
LINE |
| chr2:241429813-241435302 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 241429813 |
241429951 |
- |
16.8 |
476 |
653 |
0 |
LTR49 |
ERV1 |
LTR |
| 241429952 |
241430257 |
+ |
15.3 |
1 |
309 |
-3 |
AluJo |
Alu |
SINE |
| 241430258 |
241430282 |
- |
23.9 |
481 |
507 |
-146 |
MER39B |
ERV1 |
LTR |
| 241430295 |
241430345 |
+ |
14.0 |
1 |
50 |
-850 |
MER4D1 |
ERV1 |
LTR |
| 241430350 |
241430743 |
- |
10.7 |
104 |
508 |
-3 |
LTR10F |
ERV1 |
LTR |
| 241430744 |
241430794 |
- |
11.8 |
107 |
159 |
-352 |
LTR10F |
ERV1 |
LTR |
| 241430795 |
241430878 |
- |
8.3 |
104 |
197 |
-314 |
LTR10F |
ERV1 |
LTR |
| 241430902 |
241430987 |
- |
8.1 |
104 |
197 |
-314 |
LTR10F |
ERV1 |
LTR |
| 241431011 |
241431096 |
- |
8.1 |
104 |
197 |
-314 |
LTR10F |
ERV1 |
LTR |
| 241431120 |
241431204 |
- |
5.9 |
104 |
197 |
-314 |
LTR10F |
ERV1 |
LTR |
| 241431228 |
241431310 |
- |
3.6 |
104 |
197 |
-314 |
LTR10F |
ERV1 |
LTR |
| 241431311 |
241431361 |
- |
11.8 |
107 |
159 |
-352 |
LTR10F |
ERV1 |
LTR |
| 241431362 |
241431447 |
- |
8.1 |
104 |
197 |
-314 |
LTR10F |
ERV1 |
LTR |
| 241431471 |
241431551 |
- |
6.2 |
108 |
197 |
-314 |
LTR10F |
ERV1 |
LTR |
| 241431553 |
241431738 |
- |
8.6 |
1 |
197 |
-314 |
LTR10F |
ERV1 |
LTR |
| 241431740 |
241432595 |
+ |
16.0 |
49 |
895 |
-8 |
MER4D |
ERV1 |
LTR |
| 241432602 |
241432761 |
- |
16.2 |
205 |
415 |
-180 |
LTR49 |
ERV1 |
LTR |
| 241432762 |
241433122 |
+ |
14.6 |
1 |
373 |
-2 |
THE1C |
MaLR |
LTR |
| 241433125 |
241434727 |
+ |
10.9 |
1 |
1580 |
0 |
THE1C-int |
MaLR |
LTR |
| 241434728 |
241435098 |
+ |
11.2 |
1 |
375 |
0 |
THE1C |
MaLR |
LTR |
| 241435099 |
241435302 |
- |
10.3 |
3 |
207 |
-388 |
LTR49 |
ERV1 |
LTR |
| chr4:183278667-183284028 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 183278667 |
183279134 |
- |
31.1 |
2814 |
3278 |
-141 |
L2 |
L2 |
LINE |
| 183279135 |
183279444 |
- |
11.3 |
1 |
311 |
-1 |
AluSx |
Alu |
SINE |
| 183279445 |
183279640 |
- |
30.3 |
2621 |
2813 |
-606 |
L2 |
L2 |
LINE |
| 183279656 |
183281293 |
- |
13.3 |
706 |
2383 |
-35 |
Tigger1 |
MER2_type |
DNA |
| 183281320 |
183282002 |
- |
13.3 |
19 |
705 |
-1713 |
Tigger1 |
MER2_type |
DNA |
| 183282007 |
183282184 |
- |
25.8 |
2439 |
2616 |
-803 |
L2 |
L2 |
LINE |
| 183282185 |
183282498 |
- |
12.5 |
1 |
312 |
0 |
AluSx |
Alu |
SINE |
| 183282499 |
183282876 |
- |
25.8 |
2046 |
2438 |
-981 |
L2 |
L2 |
LINE |
| 183282881 |
183283093 |
+ |
20.4 |
7 |
230 |
-2261 |
Tigger7 |
MER2_type |
DNA |
| 183283089 |
183283154 |
+ |
20.0 |
166 |
230 |
-475 |
Tigger7 |
MER2_type |
DNA |
| 183283132 |
183283215 |
+ |
18.8 |
150 |
230 |
-321 |
Tigger7 |
MER2_type |
DNA |
| 183283219 |
183283276 |
+ |
15.8 |
174 |
230 |
-2261 |
Tigger7 |
MER2_type |
DNA |
| 183283272 |
183283337 |
+ |
20.0 |
166 |
230 |
-475 |
Tigger7 |
MER2_type |
DNA |
| 183283333 |
183283550 |
+ |
18.9 |
166 |
395 |
-2096 |
Tigger7 |
MER2_type |
DNA |
| 183283561 |
183283632 |
+ |
19.4 |
2410 |
2482 |
-9 |
Tigger7 |
MER2_type |
DNA |
| 183283643 |
183284028 |
- |
27.0 |
1699 |
2055 |
-1364 |
L2 |
L2 |
LINE |
| chr4:185113171-185116769 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 185113171 |
185113842 |
- |
28.1 |
1683 |
2397 |
-110 |
HAL1 |
L1 |
LINE |
| 185113945 |
185114349 |
- |
27.5 |
313 |
819 |
-1688 |
HAL1 |
L1 |
LINE |
| 185114425 |
185114509 |
- |
26.3 |
7931 |
8015 |
-27 |
L1MC4 |
L1 |
LINE |
| 185114631 |
185115118 |
- |
26.3 |
7434 |
7930 |
-112 |
L1MC4 |
L1 |
LINE |
| 185115119 |
185115295 |
+ |
3.4 |
5952 |
6136 |
-18 |
L1PA5 |
L1 |
LINE |
| 185115333 |
185115979 |
- |
26.3 |
6777 |
7433 |
-609 |
L1MC4 |
L1 |
LINE |
| 185115986 |
185116040 |
- |
14.6 |
6778 |
6825 |
-1217 |
L1MC4 |
L1 |
LINE |
| 185116049 |
185116100 |
- |
13.3 |
6781 |
6825 |
-1217 |
L1MC4 |
L1 |
LINE |
| 185116113 |
185116168 |
- |
10.2 |
6776 |
6824 |
-1218 |
L1MC4 |
L1 |
LINE |
| 185116176 |
185116231 |
- |
14.3 |
6776 |
6824 |
-1218 |
L1MC4 |
L1 |
LINE |
| 185116238 |
185116294 |
- |
14.0 |
6776 |
6825 |
-1217 |
L1MC4 |
L1 |
LINE |
| 185116301 |
185116466 |
- |
19.6 |
6570 |
6740 |
-1068 |
L1MC4a |
L1 |
LINE |
| 185116621 |
185116769 |
- |
27.1 |
51 |
207 |
-2300 |
HAL1 |
L1 |
LINE |
| chr4:189354756-189356151 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 189354756 |
189355200 |
+ |
15.2 |
16 |
429 |
-356 |
LTR1 |
ERV1 |
LTR |
| 189355200 |
189355260 |
+ |
7.3 |
374 |
429 |
-356 |
LTR1 |
ERV1 |
LTR |
| 189355320 |
189355380 |
+ |
16.4 |
362 |
424 |
-402 |
LTR1B |
ERV1 |
LTR |
| 189355380 |
189355440 |
+ |
13.1 |
362 |
424 |
-402 |
LTR1B |
ERV1 |
LTR |
| 189355440 |
189355500 |
+ |
16.4 |
362 |
424 |
-402 |
LTR1B |
ERV1 |
LTR |
| 189355500 |
189355560 |
+ |
14.8 |
362 |
424 |
-402 |
LTR1B |
ERV1 |
LTR |
| 189355560 |
189355620 |
+ |
13.1 |
362 |
424 |
-402 |
LTR1B |
ERV1 |
LTR |
| 189355621 |
189355680 |
+ |
16.7 |
363 |
424 |
-402 |
LTR1B |
ERV1 |
LTR |
| 189355680 |
189355739 |
+ |
15.0 |
362 |
423 |
-403 |
LTR1B |
ERV1 |
LTR |
| 189355740 |
189356151 |
+ |
12.4 |
374 |
785 |
0 |
LTR1 |
ERV1 |
LTR |
| chr5:2132993-2142793 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 2132993 |
2134322 |
+ |
27.4 |
310 |
1641 |
-4759 |
L1MEc |
L1 |
LINE |
| 2134348 |
2135069 |
+ |
20.3 |
6219 |
6925 |
-860 |
L1MC3 |
L1 |
LINE |
| 2135070 |
2135131 |
+ |
14.5 |
6863 |
6924 |
-861 |
L1MC3 |
L1 |
LINE |
| 2135132 |
2135195 |
+ |
14.1 |
6862 |
6925 |
-860 |
L1MC3 |
L1 |
LINE |
| 2135195 |
2135258 |
+ |
12.5 |
6862 |
6925 |
-860 |
L1MC3 |
L1 |
LINE |
| 2135258 |
2135321 |
+ |
14.1 |
6862 |
6925 |
-860 |
L1MC3 |
L1 |
LINE |
| 2135304 |
2135384 |
+ |
12.8 |
6848 |
6925 |
-860 |
L1MC3 |
L1 |
LINE |
| 2135384 |
2135428 |
+ |
11.1 |
6862 |
6906 |
-879 |
L1MC3 |
L1 |
LINE |
| 2135430 |
2135510 |
+ |
16.7 |
6848 |
6925 |
-860 |
L1MC3 |
L1 |
LINE |
| 2135511 |
2135573 |
+ |
14.3 |
6863 |
6925 |
-860 |
L1MC3 |
L1 |
LINE |
| 2135573 |
2135636 |
+ |
12.5 |
6862 |
6925 |
-860 |
L1MC3 |
L1 |
LINE |
| 2135636 |
2135699 |
+ |
15.6 |
6862 |
6925 |
-860 |
L1MC3 |
L1 |
LINE |
| 2135682 |
2135762 |
+ |
14.1 |
6848 |
6925 |
-860 |
L1MC3 |
L1 |
LINE |
| 2135763 |
2135825 |
+ |
12.7 |
6863 |
6925 |
-860 |
L1MC3 |
L1 |
LINE |
| 2135825 |
2135888 |
+ |
15.6 |
6862 |
6925 |
-860 |
L1MC3 |
L1 |
LINE |
| 2135889 |
2135954 |
+ |
22.7 |
6863 |
6928 |
-857 |
L1MC3 |
L1 |
LINE |
| 2136202 |
2136407 |
+ |
21.0 |
7003 |
7207 |
-578 |
L1MC3 |
L1 |
LINE |
| 2136408 |
2136669 |
+ |
11.1 |
1 |
286 |
-25 |
AluY |
Alu |
SINE |
| 2136726 |
2137276 |
+ |
21.0 |
7208 |
7785 |
0 |
L1MC3 |
L1 |
LINE |
| 2137270 |
2138793 |
+ |
23.2 |
20 |
1654 |
-4746 |
L1MEc |
L1 |
LINE |
| 2138794 |
2138926 |
+ |
17.6 |
2 |
133 |
-10 |
FLAM_C |
Alu |
SINE |
| 2138927 |
2139500 |
+ |
23.2 |
1655 |
2270 |
-4130 |
L1MEc |
L1 |
LINE |
| 2139507 |
2140476 |
+ |
13.7 |
5 |
973 |
-329 |
HSMAR2 |
Mariner |
DNA |
| 2140477 |
2141070 |
- |
11.6 |
1 |
602 |
0 |
LTR43 |
ERV1 |
LTR |
| 2141071 |
2141409 |
+ |
16.1 |
974 |
1301 |
-1 |
HSMAR2 |
Mariner |
DNA |
| 2141410 |
2141512 |
+ |
20.4 |
2277 |
2379 |
-4021 |
L1MEc |
L1 |
LINE |
| 2141570 |
2141597 |
+ |
20.7 |
2369 |
2388 |
-4012 |
L1MEc |
L1 |
LINE |
| 2141598 |
2141903 |
+ |
17.0 |
4 |
307 |
-5 |
AluJb |
Alu |
SINE |
| 2141904 |
2142793 |
+ |
25.8 |
2285 |
3261 |
-2958 |
L1MEc |
L1 |
LINE |
| chr5:133841124-133852948 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 133841124 |
133841163 |
- |
5.0 |
5616 |
5660 |
-461 |
L1M5 |
L1 |
LINE |
| 133841164 |
133841577 |
+ |
19.5 |
1 |
412 |
-74 |
MER66B |
ERV1 |
LTR |
| 133841596 |
133841731 |
+ |
12.1 |
1 |
132 |
-178 |
AluSg |
Alu |
SINE |
| 133841732 |
133841848 |
+ |
11.1 |
1 |
118 |
-191 |
AluSc |
Alu |
SINE |
| 133841873 |
133842057 |
+ |
11.1 |
119 |
304 |
-5 |
AluSc |
Alu |
SINE |
| 133842058 |
133842161 |
+ |
13.5 |
383 |
486 |
0 |
MER66B |
ERV1 |
LTR |
| 133842266 |
133842547 |
+ |
19.5 |
1 |
296 |
-16 |
AluJb |
Alu |
SINE |
| 133842585 |
133842866 |
- |
12.2 |
1 |
280 |
-32 |
AluSx |
Alu |
SINE |
| 133842876 |
133843043 |
- |
20.2 |
1 |
166 |
-10 |
FRAM |
Alu |
SINE |
| 133843050 |
133843291 |
+ |
25.1 |
5031 |
5309 |
-837 |
L1M5 |
L1 |
LINE |
| 133843292 |
133843838 |
- |
18.9 |
2 |
550 |
0 |
MER44B |
MER2_type |
DNA |
| 133843839 |
133843852 |
+ |
25.1 |
5310 |
5322 |
-824 |
L1M5 |
L1 |
LINE |
| 133843842 |
133844056 |
+ |
27.0 |
2942 |
3181 |
-2965 |
L1M5 |
L1 |
LINE |
| 133844059 |
133844347 |
- |
11.1 |
6 |
294 |
-16 |
AluSg |
Alu |
SINE |
| 133844348 |
133844638 |
+ |
25.6 |
3184 |
3478 |
-2668 |
L1M5 |
L1 |
LINE |
| 133844639 |
133844929 |
+ |
12.4 |
1 |
291 |
-22 |
AluSq |
Alu |
SINE |
| 133844930 |
133845287 |
+ |
25.6 |
3479 |
3844 |
-2302 |
L1M5 |
L1 |
LINE |
| 133845288 |
133845586 |
+ |
8.8 |
1 |
311 |
-2 |
AluSp |
Alu |
SINE |
| 133845587 |
133845688 |
+ |
25.6 |
3845 |
3944 |
-2202 |
L1M5 |
L1 |
LINE |
| 133845689 |
133845986 |
- |
8.1 |
1 |
301 |
-12 |
AluSq |
Alu |
SINE |
| 133846012 |
133846322 |
- |
4.8 |
1 |
311 |
0 |
AluY |
Alu |
SINE |
| 133846323 |
133846494 |
+ |
25.6 |
3945 |
4103 |
-2043 |
L1M5 |
L1 |
LINE |
| 133846495 |
133846599 |
- |
9.6 |
202 |
305 |
-6 |
AluY |
Alu |
SINE |
| 133846600 |
133846635 |
- |
13.9 |
205 |
240 |
-60 |
Alu |
Alu |
SINE |
| 133846636 |
133846693 |
- |
17.2 |
191 |
248 |
-52 |
Alu |
Alu |
SINE |
| 133846677 |
133846731 |
- |
23.6 |
215 |
269 |
-33 |
AluSg/x |
Alu |
SINE |
| 133846730 |
133846787 |
- |
15.5 |
191 |
248 |
-52 |
Alu |
Alu |
SINE |
| 133846771 |
133846825 |
- |
21.8 |
203 |
257 |
-43 |
Alu |
Alu |
SINE |
| 133846824 |
133846864 |
- |
12.2 |
208 |
248 |
-52 |
Alu |
Alu |
SINE |
| 133846865 |
133847132 |
- |
9.0 |
1 |
268 |
-43 |
AluY |
Alu |
SINE |
| 133847153 |
133847299 |
+ |
35.4 |
3955 |
4102 |
-2044 |
L1M5 |
L1 |
LINE |
| 133847301 |
133847400 |
- |
10.1 |
202 |
300 |
-11 |
AluY |
Alu |
SINE |
| 133847401 |
133847436 |
- |
13.9 |
205 |
240 |
-60 |
Alu |
Alu |
SINE |
| 133847437 |
133847494 |
- |
15.5 |
191 |
248 |
-52 |
Alu |
Alu |
SINE |
| 133847495 |
133847532 |
- |
13.2 |
203 |
240 |
-60 |
Alu |
Alu |
SINE |
| 133847531 |
133847588 |
- |
15.5 |
191 |
248 |
-52 |
Alu |
Alu |
SINE |
| 133847572 |
133847626 |
- |
21.8 |
203 |
257 |
-43 |
Alu |
Alu |
SINE |
| 133847625 |
133847665 |
- |
12.2 |
208 |
248 |
-52 |
Alu |
Alu |
SINE |
| 133847666 |
133847933 |
- |
9.3 |
1 |
268 |
-43 |
AluY |
Alu |
SINE |
| 133847996 |
133848017 |
+ |
26.5 |
4160 |
4178 |
-1968 |
L1M5 |
L1 |
LINE |
| 133848018 |
133848322 |
+ |
12.0 |
2 |
312 |
0 |
AluSx |
Alu |
SINE |
| 133848323 |
133848717 |
+ |
26.5 |
4179 |
4609 |
-1537 |
L1M5 |
L1 |
LINE |
| 133848718 |
133849002 |
+ |
16.2 |
1 |
273 |
-39 |
AluJo |
Alu |
SINE |
| 133849003 |
133850059 |
+ |
26.3 |
4610 |
5724 |
-516 |
L1M5 |
L1 |
LINE |
| 133850061 |
133850133 |
- |
33.8 |
368 |
450 |
0 |
LTR16A |
ERVL |
LTR |
| 133850134 |
133850518 |
+ |
17.9 |
1 |
361 |
-65 |
MSTB |
MaLR |
LTR |
| 133850519 |
133850831 |
- |
13.4 |
1 |
313 |
0 |
AluSq |
Alu |
SINE |
| 133850832 |
133850896 |
+ |
17.9 |
362 |
426 |
0 |
MSTB |
MaLR |
LTR |
| 133850897 |
133851249 |
- |
33.8 |
4 |
367 |
-83 |
LTR16A |
ERVL |
LTR |
| 133851359 |
133851823 |
- |
19.4 |
5478 |
5957 |
-209 |
L1ME1 |
L1 |
LINE |
| 133851824 |
133852134 |
- |
11.6 |
1 |
311 |
-1 |
AluSx |
Alu |
SINE |
| 133852135 |
133852696 |
- |
20.0 |
4832 |
5477 |
-689 |
L1ME1 |
L1 |
LINE |
| 133852720 |
133852948 |
- |
33.2 |
4791 |
5016 |
-1130 |
L1M5 |
L1 |
LINE |
| chr5:175565061-175571358 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 175565061 |
175565292 |
- |
17.6 |
4472 |
4716 |
-1430 |
L1M4 |
L1 |
LINE |
| 175565293 |
175565601 |
+ |
9.1 |
1 |
310 |
0 |
AluSg |
Alu |
SINE |
| 175565602 |
175565694 |
- |
17.6 |
4379 |
4471 |
-1675 |
L1M4 |
L1 |
LINE |
| 175565695 |
175565927 |
- |
16.0 |
192 |
428 |
0 |
MSTA |
MaLR |
LTR |
| 175565928 |
175566221 |
- |
13.9 |
1 |
294 |
-18 |
AluSx |
Alu |
SINE |
| 175566229 |
175566525 |
- |
12.8 |
1 |
302 |
-10 |
AluSx |
Alu |
SINE |
| 175566526 |
175566668 |
- |
16.0 |
58 |
191 |
-237 |
MSTA |
MaLR |
LTR |
| 175566669 |
175566720 |
- |
13.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 175566721 |
175566772 |
- |
13.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 175566773 |
175566824 |
- |
11.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 175566877 |
175566928 |
- |
11.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 175566929 |
175566980 |
- |
15.4 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 175567085 |
175567136 |
- |
13.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 175567137 |
175567188 |
- |
11.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 175567189 |
175567240 |
- |
9.6 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 175567241 |
175567312 |
- |
16.7 |
38 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 175567315 |
175568929 |
- |
14.3 |
1 |
1635 |
-16 |
MSTA-int |
MaLR |
LTR |
| 175568930 |
175568986 |
- |
15.1 |
390 |
428 |
0 |
MSTA |
MaLR |
LTR |
| 175568987 |
175569298 |
- |
14.0 |
2 |
310 |
-2 |
AluSx |
Alu |
SINE |
| 175569299 |
175569672 |
- |
15.1 |
1 |
389 |
-39 |
MSTA |
MaLR |
LTR |
| 175569673 |
175569769 |
- |
15.9 |
4294 |
4381 |
-1765 |
L1M4 |
L1 |
LINE |
| 175569770 |
175570059 |
- |
12.4 |
1 |
291 |
-21 |
AluSx |
Alu |
SINE |
| 175570060 |
175571358 |
- |
15.9 |
2987 |
4293 |
-1853 |
L1M4 |
L1 |
LINE |
| chr5:177058798-177065789 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 177058798 |
177060127 |
+ |
15.0 |
2987 |
4293 |
-1853 |
L1M4 |
L1 |
LINE |
| 177060128 |
177060417 |
+ |
11.0 |
1 |
291 |
-21 |
AluSx |
Alu |
SINE |
| 177060418 |
177060514 |
+ |
15.0 |
4294 |
4381 |
-1765 |
L1M4 |
L1 |
LINE |
| 177060515 |
177060889 |
+ |
14.4 |
1 |
389 |
-39 |
MSTA |
MaLR |
LTR |
| 177060890 |
177061178 |
+ |
15.6 |
2 |
291 |
-21 |
AluSx |
Alu |
SINE |
| 177061179 |
177061256 |
+ |
14.4 |
390 |
428 |
0 |
MSTA |
MaLR |
LTR |
| 177061257 |
177061518 |
+ |
14.8 |
1 |
263 |
-1388 |
MSTA-int |
MaLR |
LTR |
| 177061519 |
177061814 |
- |
3.7 |
1 |
295 |
-16 |
AluY |
Alu |
SINE |
| 177061815 |
177063176 |
+ |
14.8 |
264 |
1635 |
-16 |
MSTA-int |
MaLR |
LTR |
| 177063179 |
177063250 |
+ |
15.3 |
38 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 177063251 |
177063302 |
+ |
15.4 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 177063303 |
177063354 |
+ |
13.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 177063355 |
177063406 |
+ |
13.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 177063407 |
177063458 |
+ |
13.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 177063459 |
177063510 |
+ |
11.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 177063511 |
177063562 |
+ |
11.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 177063563 |
177063614 |
+ |
13.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 177063615 |
177063666 |
+ |
13.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 177063667 |
177063718 |
+ |
15.4 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 177063719 |
177063770 |
+ |
15.4 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 177063771 |
177063822 |
+ |
13.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 177063823 |
177063874 |
+ |
13.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 177063875 |
177063926 |
+ |
11.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 177063927 |
177063978 |
+ |
13.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 177063979 |
177064030 |
+ |
13.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 177064031 |
177064082 |
+ |
13.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 177064083 |
177064134 |
+ |
13.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 177064135 |
177064186 |
+ |
11.5 |
58 |
110 |
-318 |
MSTA |
MaLR |
LTR |
| 177064187 |
177064329 |
+ |
14.9 |
58 |
194 |
-234 |
MSTA |
MaLR |
LTR |
| 177064330 |
177064621 |
+ |
13.8 |
1 |
296 |
-16 |
AluSx |
Alu |
SINE |
| 177064629 |
177064922 |
+ |
13.9 |
1 |
294 |
-18 |
AluSx |
Alu |
SINE |
| 177064923 |
177065155 |
+ |
14.9 |
195 |
428 |
0 |
MSTA |
MaLR |
LTR |
| 177065156 |
177065255 |
+ |
16.7 |
4379 |
4475 |
-1671 |
L1M4 |
L1 |
LINE |
| 177065256 |
177065564 |
- |
8.4 |
1 |
310 |
0 |
AluSg |
Alu |
SINE |
| 177065565 |
177065789 |
+ |
16.7 |
4476 |
4716 |
-1430 |
L1M4 |
L1 |
LINE |
| chr5:180273505-180283529 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 180273505 |
180273682 |
+ |
30.2 |
2589 |
2768 |
-3378 |
L1M5 |
L1 |
LINE |
| 180273683 |
180274070 |
+ |
17.8 |
4 |
407 |
-1 |
MLT1A1 |
MaLR |
LTR |
| 180274071 |
180274263 |
+ |
30.2 |
2769 |
2965 |
-3181 |
L1M5 |
L1 |
LINE |
| 180274290 |
180275233 |
+ |
26.2 |
2 |
1006 |
-5135 |
L1MB1 |
L1 |
LINE |
| 180275249 |
180275545 |
+ |
14.7 |
3737 |
4040 |
-2103 |
L1M2 |
L1 |
LINE |
| 180275547 |
180275888 |
- |
18.7 |
3 |
396 |
0 |
MSTD |
MaLR |
LTR |
| 180275907 |
180276288 |
+ |
13.9 |
3013 |
3408 |
-2796 |
L1MB1 |
L1 |
LINE |
| 180276291 |
180276383 |
- |
17.2 |
2397 |
2489 |
-2 |
Tigger7 |
MER2_type |
DNA |
| 180276382 |
180276563 |
- |
23.1 |
3 |
185 |
-520 |
Tigger7 |
MER2_type |
DNA |
| 180276567 |
180276611 |
+ |
15.6 |
3408 |
3452 |
-2752 |
L1MB1 |
L1 |
LINE |
| 180276636 |
180276680 |
+ |
15.6 |
3408 |
3452 |
-2752 |
L1MB1 |
L1 |
LINE |
| 180276695 |
180276749 |
+ |
13.8 |
3406 |
3455 |
-2752 |
L1MB1 |
L1 |
LINE |
| 180276774 |
180276818 |
+ |
11.1 |
3408 |
3452 |
-2752 |
L1MB1 |
L1 |
LINE |
| 180276843 |
180276887 |
+ |
11.1 |
3408 |
3452 |
-2752 |
L1MB1 |
L1 |
LINE |
| 180276912 |
180276956 |
+ |
11.1 |
3408 |
3452 |
-2752 |
L1MB1 |
L1 |
LINE |
| 180276981 |
180277025 |
+ |
11.1 |
3408 |
3452 |
-2752 |
L1MB1 |
L1 |
LINE |
| 180277050 |
180277094 |
+ |
11.1 |
3408 |
3452 |
-2752 |
L1MB1 |
L1 |
LINE |
| 180277089 |
180277347 |
+ |
17.4 |
3384 |
3641 |
-2566 |
L1MB1 |
L1 |
LINE |
| 180277353 |
180277664 |
+ |
7.7 |
1 |
311 |
0 |
AluY |
Alu |
SINE |
| 180277665 |
180278137 |
+ |
17.7 |
3633 |
4070 |
-2134 |
L1MB1 |
L1 |
LINE |
| 180278138 |
180279036 |
- |
14.6 |
1 |
900 |
0 |
MER4D1 |
ERV1 |
LTR |
| 180279037 |
180279734 |
+ |
17.7 |
4071 |
4811 |
-1393 |
L1MB1 |
L1 |
LINE |
| 180279735 |
180279814 |
- |
7.5 |
1 |
80 |
0 |
MADE1 |
Mariner |
DNA |
| 180279815 |
180281221 |
+ |
19.8 |
4748 |
6119 |
-181 |
L1MA6 |
L1 |
LINE |
| 180280761 |
180281266 |
+ |
21.3 |
5617 |
6158 |
-31 |
L1MB1 |
L1 |
LINE |
| 180281314 |
180281480 |
+ |
21.3 |
6159 |
6313 |
-21 |
L1MA10 |
L1 |
LINE |
| 180281549 |
180282786 |
- |
11.6 |
2156 |
3404 |
-2742 |
L1PREC2 |
L1 |
LINE |
| 180282819 |
180283529 |
+ |
30.3 |
3713 |
4437 |
-1709 |
L1M5 |
L1 |
LINE |
| chr5:180832122-180835373 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 180832122 |
180832568 |
- |
21.1 |
1063 |
1506 |
-3430 |
MER34B-int |
ERV1 |
LTR |
| 180832572 |
180832639 |
+ |
25.0 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 180832665 |
180832757 |
+ |
20.3 |
3 |
96 |
-501 |
MLT2B3 |
ERVL |
LTR |
| 180832758 |
180832825 |
+ |
19.1 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 180832851 |
180832943 |
+ |
21.6 |
3 |
96 |
-501 |
MLT2B3 |
ERVL |
LTR |
| 180832944 |
180833011 |
+ |
19.1 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 180833037 |
180833104 |
+ |
16.2 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 180833130 |
180833197 |
+ |
19.1 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 180833223 |
180833290 |
+ |
19.1 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 180833316 |
180833383 |
+ |
20.6 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 180833409 |
180833476 |
+ |
16.2 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 180833502 |
180833569 |
+ |
17.6 |
3 |
72 |
-482 |
MLT2B5 |
ERVL |
LTR |
| 180833595 |
180833821 |
+ |
20.4 |
3 |
274 |
-388 |
MLT2B3 |
ERVL |
LTR |
| 180833822 |
180834183 |
+ |
13.9 |
1 |
375 |
0 |
THE1C |
MaLR |
LTR |
| 180834184 |
180834533 |
+ |
23.1 |
159 |
597 |
-4 |
MLT2B5 |
ERVL |
LTR |
| 180834541 |
180834905 |
- |
27.3 |
620 |
1063 |
-3873 |
MER34B-int |
ERV1 |
LTR |
| 180834881 |
180835220 |
- |
26.5 |
173 |
515 |
-4421 |
MER34B-int |
ERV1 |
LTR |
| 180835262 |
180835373 |
- |
19.2 |
500 |
623 |
-4733 |
MER34B-int |
ERV1 |
LTR |
| chr6:161650260-161659077 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 161650260 |
161650372 |
- |
27.7 |
7930 |
8042 |
0 |
L1MC4 |
L1 |
LINE |
| 161650380 |
161650675 |
- |
11.7 |
19 |
313 |
0 |
AluSp |
Alu |
SINE |
| 161650676 |
161651180 |
- |
9.0 |
1 |
508 |
-3 |
LTR10F |
ERV1 |
LTR |
| 161651181 |
161656136 |
- |
9.6 |
1 |
5102 |
0 |
HERVIP10FH |
ERV1 |
LTR |
| 161656137 |
161656537 |
- |
9.3 |
104 |
511 |
0 |
LTR10F |
ERV1 |
LTR |
| 161656543 |
161656649 |
- |
3.0 |
104 |
210 |
-301 |
LTR10F |
ERV1 |
LTR |
| 161656655 |
161656684 |
- |
0.0 |
127 |
156 |
-355 |
LTR10F |
ERV1 |
LTR |
| 161656685 |
161656896 |
- |
5.4 |
1 |
210 |
-301 |
LTR10F |
ERV1 |
LTR |
| 161656993 |
161657875 |
+ |
14.7 |
45 |
977 |
-254 |
Tigger3b |
MER2_type |
DNA |
| 161657876 |
161658167 |
- |
13.0 |
1 |
295 |
-18 |
AluSq |
Alu |
SINE |
| 161658168 |
161658355 |
+ |
14.7 |
978 |
1170 |
-61 |
Tigger3b |
MER2_type |
DNA |
| 161658356 |
161658644 |
- |
8.0 |
10 |
298 |
-14 |
AluSx |
Alu |
SINE |
| 161658645 |
161658725 |
+ |
14.7 |
1171 |
1231 |
0 |
Tigger3b |
MER2_type |
DNA |
| 161658920 |
161659077 |
- |
27.4 |
7742 |
7912 |
-130 |
L1MC4 |
L1 |
LINE |
| chr6:170475891-170479754 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 170475891 |
170476548 |
- |
24.7 |
2154 |
2780 |
-3439 |
L1MEc |
L1 |
LINE |
| 170476572 |
170476881 |
+ |
9.0 |
1 |
300 |
-13 |
AluSq |
Alu |
SINE |
| 170476902 |
170476947 |
+ |
6.5 |
1 |
46 |
-34 |
MADE1 |
Mariner |
DNA |
| 170476948 |
170477266 |
- |
25.0 |
1968 |
8008 |
-4290 |
L1MC4 |
L1 |
LINE |
| 170477080 |
170477510 |
- |
23.3 |
5961 |
6416 |
-16 |
L1MD2 |
L1 |
LINE |
| 170477541 |
170477740 |
- |
19.4 |
163 |
340 |
-1 |
MER58B |
MER1_type |
DNA |
| 170477741 |
170478056 |
- |
16.4 |
1 |
311 |
-1 |
AluJo |
Alu |
SINE |
| 170478067 |
170478358 |
- |
5.8 |
1 |
292 |
-19 |
AluY |
Alu |
SINE |
| 170478359 |
170478508 |
- |
19.4 |
7 |
162 |
-179 |
MER58B |
MER1_type |
DNA |
| 170478548 |
170478650 |
- |
20.4 |
2587 |
2693 |
-336 |
Tigger3(Golem) |
MER2_type |
DNA |
| 170478644 |
170478746 |
- |
19.4 |
2587 |
2691 |
-338 |
Tigger3(Golem) |
MER2_type |
DNA |
| 170478737 |
170478842 |
- |
21.7 |
2587 |
2694 |
-335 |
Tigger3(Golem) |
MER2_type |
DNA |
| 170478836 |
170478939 |
- |
22.1 |
2584 |
2691 |
-338 |
Tigger3(Golem) |
MER2_type |
DNA |
| 170478930 |
170479356 |
- |
12.7 |
2284 |
2691 |
-338 |
Tigger3(Golem) |
MER2_type |
DNA |
| 170479488 |
170479754 |
- |
28.7 |
1266 |
1561 |
-4839 |
L1MEc |
L1 |
LINE |
| chr7:1964627-1969750 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 1964627 |
1965130 |
+ |
27.0 |
624 |
1174 |
-5226 |
L1ME1 |
L1 |
LINE |
| 1965131 |
1965434 |
+ |
13.9 |
1 |
307 |
-5 |
AluSx |
Alu |
SINE |
| 1965435 |
1967829 |
+ |
27.5 |
1175 |
5177 |
-1042 |
L1ME1 |
L1 |
LINE |
| 1967831 |
1967961 |
+ |
11.4 |
1 |
133 |
-242 |
THE1C |
MaLR |
LTR |
| 1967945 |
1968027 |
+ |
18.5 |
51 |
133 |
-242 |
THE1C |
MaLR |
LTR |
| 1968011 |
1968093 |
+ |
17.3 |
51 |
133 |
-242 |
THE1C |
MaLR |
LTR |
| 1968077 |
1968159 |
+ |
19.8 |
51 |
133 |
-242 |
THE1C |
MaLR |
LTR |
| 1968143 |
1968222 |
+ |
20.5 |
51 |
130 |
-245 |
THE1C |
MaLR |
LTR |
| 1968209 |
1968290 |
+ |
18.8 |
51 |
132 |
-243 |
THE1C |
MaLR |
LTR |
| 1968269 |
1968581 |
+ |
15.9 |
45 |
353 |
-2 |
THE1A |
MaLR |
LTR |
| 1968585 |
1968947 |
+ |
19.3 |
5180 |
5550 |
-689 |
L1ME1 |
L1 |
LINE |
| 1968954 |
1969135 |
+ |
13.4 |
1 |
171 |
-5 |
FRAM |
Alu |
SINE |
| 1969187 |
1969750 |
+ |
34.3 |
5633 |
6234 |
-5 |
L1ME1 |
L1 |
LINE |
| chr8:10920764-10922384 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 10920764 |
10920948 |
+ |
20.9 |
9 |
191 |
-133 |
MER33 |
MER1_type |
DNA |
| 10920952 |
10921105 |
- |
15.6 |
2880 |
3028 |
-1 |
Tigger3(Golem) |
MER2_type |
DNA |
| 10921129 |
10921180 |
- |
13.5 |
2880 |
2936 |
-93 |
Tigger3(Golem) |
MER2_type |
DNA |
| 10921195 |
10921252 |
- |
10.5 |
2882 |
2943 |
-86 |
Tigger3(Golem) |
MER2_type |
DNA |
| 10921253 |
10921302 |
- |
20.0 |
2882 |
2936 |
-93 |
Tigger3(Golem) |
MER2_type |
DNA |
| 10921303 |
10921354 |
- |
11.5 |
2880 |
2936 |
-93 |
Tigger3(Golem) |
MER2_type |
DNA |
| 10921378 |
10921429 |
- |
9.6 |
2880 |
2936 |
-93 |
Tigger3(Golem) |
MER2_type |
DNA |
| 10921432 |
10921486 |
- |
11.3 |
2875 |
2932 |
-97 |
Tigger3(Golem) |
MER2_type |
DNA |
| 10921494 |
10921553 |
- |
13.6 |
2880 |
2943 |
-86 |
Tigger3(Golem) |
MER2_type |
DNA |
| 10921593 |
10921652 |
- |
11.9 |
2880 |
2943 |
-86 |
Tigger3(Golem) |
MER2_type |
DNA |
| 10921655 |
10921685 |
- |
9.7 |
2902 |
2932 |
-97 |
Tigger3(Golem) |
MER2_type |
DNA |
| 10921694 |
10921750 |
- |
14.3 |
2882 |
2942 |
-87 |
Tigger3(Golem) |
MER2_type |
DNA |
| 10921751 |
10921805 |
- |
16.4 |
2877 |
2936 |
-93 |
Tigger3(Golem) |
MER2_type |
DNA |
| 10921826 |
10921877 |
- |
11.5 |
2880 |
2936 |
-93 |
Tigger3(Golem) |
MER2_type |
DNA |
| 10921893 |
10921952 |
- |
18.6 |
2880 |
2943 |
-86 |
Tigger3(Golem) |
MER2_type |
DNA |
| 10921976 |
10922229 |
- |
14.2 |
2 |
254 |
-92 |
MER7A |
MER2_type |
DNA |
| 10922233 |
10922384 |
+ |
14.1 |
195 |
322 |
-2 |
MER33 |
MER1_type |
DNA |
| chr8:122738771-122740537 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 122738771 |
122738955 |
- |
16.3 |
4168 |
4362 |
-1778 |
L1M3 |
L1 |
LINE |
| 122738938 |
122738957 |
- |
13.3 |
6146 |
6164 |
-1 |
L1PA15 |
L1 |
LINE |
| 122738958 |
122739009 |
- |
1.9 |
6105 |
6161 |
-4 |
L1PA15 |
L1 |
LINE |
| 122739010 |
122739050 |
- |
13.3 |
6105 |
6145 |
-20 |
L1PA15 |
L1 |
LINE |
| 122739051 |
122739091 |
- |
4.9 |
6105 |
6145 |
-20 |
L1PA15 |
L1 |
LINE |
| 122739092 |
122739132 |
- |
4.9 |
6105 |
6145 |
-20 |
L1PA15 |
L1 |
LINE |
| 122739133 |
122739173 |
- |
4.9 |
6105 |
6145 |
-15 |
L1PREC2 |
L1 |
LINE |
| 122739174 |
122739214 |
- |
2.4 |
6105 |
6145 |
-15 |
L1PREC2 |
L1 |
LINE |
| 122739215 |
122739255 |
- |
2.4 |
6105 |
6145 |
-20 |
L1PA15 |
L1 |
LINE |
| 122739256 |
122739296 |
- |
4.9 |
6105 |
6145 |
-15 |
L1PREC2 |
L1 |
LINE |
| 122739297 |
122739337 |
- |
2.4 |
6105 |
6145 |
-15 |
L1PREC2 |
L1 |
LINE |
| 122739338 |
122739564 |
- |
8.6 |
5925 |
6145 |
-15 |
L1PREC2 |
L1 |
LINE |
| 122739570 |
122739996 |
- |
18.3 |
3743 |
4150 |
-1990 |
L1M3 |
L1 |
LINE |
| 122739997 |
122740290 |
- |
10.9 |
18 |
311 |
-1 |
AluSx |
Alu |
SINE |
| 122740291 |
122740537 |
- |
18.3 |
3508 |
3742 |
-2398 |
L1M3 |
L1 |
LINE |
| chr8:122861964-122864322 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 122861964 |
122862049 |
+ |
28.1 |
2552 |
2630 |
-789 |
L2 |
L2 |
LINE |
| 122862050 |
122862344 |
- |
6.1 |
1 |
295 |
-16 |
AluY |
Alu |
SINE |
| 122862345 |
122862872 |
+ |
28.9 |
2631 |
3192 |
-227 |
L2 |
L2 |
LINE |
| 122862887 |
122863202 |
- |
8.9 |
141 |
464 |
0 |
LTR7B |
ERV1 |
LTR |
| 122863203 |
122863255 |
- |
7.5 |
185 |
238 |
-226 |
LTR7B |
ERV1 |
LTR |
| 122863256 |
122863382 |
- |
11.8 |
141 |
278 |
-186 |
LTR7B |
ERV1 |
LTR |
| 122863406 |
122863532 |
- |
12.6 |
141 |
278 |
-186 |
LTR7B |
ERV1 |
LTR |
| 122863533 |
122863636 |
- |
13.5 |
163 |
269 |
-195 |
LTR7B |
ERV1 |
LTR |
| 122863646 |
122863918 |
- |
6.2 |
1 |
278 |
-186 |
LTR7B |
ERV1 |
LTR |
| 122864058 |
122864190 |
+ |
18.8 |
1 |
133 |
0 |
FLAM_A |
Alu |
SINE |
| 122864219 |
122864322 |
+ |
31.1 |
3305 |
3415 |
-4 |
L2 |
L2 |
LINE |
| chr8:145804715-145811191 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 145804715 |
145805590 |
- |
27.1 |
3860 |
4804 |
-1415 |
L1MEc |
L1 |
LINE |
| 145805591 |
145805894 |
- |
10.0 |
1 |
302 |
-8 |
AluSg |
Alu |
SINE |
| 145805895 |
145806622 |
- |
27.1 |
3109 |
3859 |
-2360 |
L1MEc |
L1 |
LINE |
| 145806623 |
145806916 |
+ |
7.5 |
1 |
293 |
-18 |
AluY |
Alu |
SINE |
| 145806917 |
145807023 |
- |
27.1 |
3003 |
3108 |
-3111 |
L1MEc |
L1 |
LINE |
| 145807024 |
145807311 |
- |
11.2 |
1 |
286 |
-26 |
AluSx |
Alu |
SINE |
| 145807312 |
145807926 |
- |
27.1 |
2312 |
3002 |
-3217 |
L1MEc |
L1 |
LINE |
| 145807927 |
145808219 |
+ |
17.1 |
1 |
300 |
-13 |
AluSq |
Alu |
SINE |
| 145808220 |
145808314 |
+ |
22.1 |
177 |
271 |
-41 |
AluJb |
Alu |
SINE |
| 145808315 |
145808363 |
+ |
16.3 |
224 |
272 |
-30 |
AluJ/FRAM |
Alu |
SINE |
| 145808364 |
145808411 |
+ |
16.7 |
225 |
272 |
-30 |
AluJ/FRAM |
Alu |
SINE |
| 145808412 |
145808507 |
+ |
18.5 |
89 |
272 |
-30 |
AluJ/FRAM |
Alu |
SINE |
| 145808508 |
145808555 |
+ |
16.7 |
225 |
272 |
-30 |
AluJ/FRAM |
Alu |
SINE |
| 145808556 |
145808651 |
+ |
18.5 |
89 |
272 |
-30 |
AluJ/FRAM |
Alu |
SINE |
| 145808652 |
145808699 |
+ |
16.7 |
225 |
272 |
-30 |
AluJ/FRAM |
Alu |
SINE |
| 145808700 |
145808747 |
+ |
16.7 |
225 |
272 |
-30 |
AluJ/FRAM |
Alu |
SINE |
| 145808748 |
145808843 |
+ |
18.5 |
89 |
272 |
-30 |
AluJ/FRAM |
Alu |
SINE |
| 145808844 |
145808891 |
+ |
16.7 |
225 |
272 |
-30 |
AluJ/FRAM |
Alu |
SINE |
| 145808892 |
145808939 |
+ |
16.7 |
225 |
272 |
-30 |
AluJ/FRAM |
Alu |
SINE |
| 145808962 |
145809054 |
+ |
19.4 |
197 |
291 |
-21 |
AluJb |
Alu |
SINE |
| 145809062 |
145810547 |
- |
21.2 |
762 |
2340 |
-4060 |
L1MEc |
L1 |
LINE |
| 145810548 |
145810845 |
- |
9.1 |
1 |
298 |
-14 |
AluSx |
Alu |
SINE |
| 145810846 |
145811191 |
- |
21.2 |
400 |
761 |
-5639 |
L1MEc |
L1 |
LINE |
| chr9:135147896-135150343 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 135147896 |
135148139 |
- |
13.4 |
217 |
480 |
-2 |
MER51E |
ERV1 |
LTR |
| 135148261 |
135148525 |
- |
15.0 |
49 |
309 |
-3 |
AluJo |
Alu |
SINE |
| 135148552 |
135148673 |
- |
16.4 |
209 |
330 |
-131 |
MER65C |
ERV1 |
LTR |
| 135148729 |
135148765 |
- |
10.8 |
209 |
245 |
-216 |
MER65C |
ERV1 |
LTR |
| 135148792 |
135149788 |
+ |
15.1 |
1 |
1002 |
0 |
LTR5B |
ERVK |
LTR |
| 135149796 |
135149832 |
- |
13.5 |
209 |
245 |
-216 |
MER65C |
ERV1 |
LTR |
| 135149925 |
135149961 |
- |
16.2 |
209 |
245 |
-216 |
MER65C |
ERV1 |
LTR |
| 135149957 |
135149993 |
- |
13.5 |
209 |
245 |
-216 |
MER65C |
ERV1 |
LTR |
| 135150081 |
135150198 |
- |
16.2 |
156 |
266 |
-195 |
MER65C |
ERV1 |
LTR |
| 135150198 |
135150343 |
- |
10.3 |
86 |
231 |
-251 |
MER51E |
ERV1 |
LTR |
| chr10:1491080-1493171 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 1491080 |
1491675 |
+ |
12.2 |
5336 |
5951 |
-212 |
L1PA13 |
L1 |
LINE |
| 1491676 |
1491968 |
+ |
13.0 |
1 |
295 |
-18 |
AluSq |
Alu |
SINE |
| 1491969 |
1492149 |
+ |
12.2 |
5952 |
6122 |
-41 |
L1PA13 |
L1 |
LINE |
| 1492165 |
1492217 |
+ |
19.6 |
6072 |
6122 |
-38 |
L1PREC2 |
L1 |
LINE |
| 1492199 |
1492251 |
+ |
19.6 |
6072 |
6122 |
-38 |
L1PREC2 |
L1 |
LINE |
| 1492335 |
1492403 |
+ |
22.4 |
6072 |
6141 |
-19 |
L1PREC2 |
L1 |
LINE |
| 1492390 |
1492455 |
+ |
21.0 |
6061 |
6122 |
-38 |
L1PREC2 |
L1 |
LINE |
| 1492437 |
1492489 |
+ |
21.6 |
6072 |
6122 |
-41 |
L1PA13 |
L1 |
LINE |
| 1492471 |
1492523 |
+ |
17.6 |
6072 |
6122 |
-38 |
L1PREC2 |
L1 |
LINE |
| 1492508 |
1492555 |
+ |
17.4 |
6075 |
6120 |
-41 |
L1PA14 |
L1 |
LINE |
| 1492539 |
1492625 |
+ |
20.7 |
6072 |
6141 |
-38 |
L1PREC2 |
L1 |
LINE |
| 1492811 |
1492863 |
+ |
21.6 |
6072 |
6122 |
-38 |
L1PREC2 |
L1 |
LINE |
| 1492845 |
1492913 |
+ |
22.4 |
6072 |
6141 |
-19 |
L1PREC2 |
L1 |
LINE |
| 1492900 |
1492965 |
+ |
19.4 |
6061 |
6122 |
-38 |
L1PREC2 |
L1 |
LINE |
| 1492947 |
1492998 |
+ |
20.0 |
6072 |
6121 |
-39 |
L1PREC2 |
L1 |
LINE |
| 1492981 |
1493033 |
+ |
21.6 |
6072 |
6122 |
-38 |
L1PREC2 |
L1 |
LINE |
| 1493015 |
1493067 |
+ |
19.6 |
6072 |
6122 |
-38 |
L1PREC2 |
L1 |
LINE |
| 1493092 |
1493171 |
+ |
12.8 |
6081 |
6163 |
0 |
L1PA13 |
L1 |
LINE |
| chr10:116684136-116685757 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 116684136 |
116684160 |
- |
23.4 |
3394 |
3419 |
0 |
L2 |
L2 |
LINE |
| 116684161 |
116684479 |
+ |
9.4 |
1 |
313 |
0 |
AluSq |
Alu |
SINE |
| 116684480 |
116684620 |
- |
23.4 |
3255 |
3393 |
-26 |
L2 |
L2 |
LINE |
| 116684622 |
116684987 |
- |
15.2 |
52 |
425 |
-1 |
MSTB |
MaLR |
LTR |
| 116684989 |
116685060 |
- |
13.9 |
53 |
124 |
-304 |
MSTA |
MaLR |
LTR |
| 116685059 |
116685133 |
- |
14.7 |
53 |
127 |
-301 |
MSTA |
MaLR |
LTR |
| 116685132 |
116685206 |
- |
14.7 |
53 |
127 |
-301 |
MSTA |
MaLR |
LTR |
| 116685205 |
116685279 |
- |
14.7 |
53 |
127 |
-301 |
MSTA |
MaLR |
LTR |
| 116685278 |
116685352 |
- |
13.3 |
53 |
127 |
-301 |
MSTA |
MaLR |
LTR |
| 116685351 |
116685425 |
- |
13.3 |
53 |
127 |
-301 |
MSTA |
MaLR |
LTR |
| 116685424 |
116685498 |
- |
12.0 |
53 |
127 |
-301 |
MSTA |
MaLR |
LTR |
| 116685497 |
116685618 |
- |
13.9 |
5 |
126 |
-300 |
MSTB |
MaLR |
LTR |
| 116685623 |
116685757 |
- |
28.6 |
3136 |
3260 |
-159 |
L2 |
L2 |
LINE |
| chr12:131975201-131985541 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 131975201 |
131975682 |
+ |
12.7 |
1 |
533 |
-367 |
MER4D1 |
ERV1 |
LTR |
| 131975683 |
131975967 |
+ |
15.8 |
1 |
306 |
-6 |
AluJb |
Alu |
SINE |
| 131975968 |
131976083 |
+ |
12.7 |
534 |
659 |
-241 |
MER4D1 |
ERV1 |
LTR |
| 131976107 |
131976169 |
+ |
9.5 |
1 |
63 |
-255 |
AluSg1 |
Alu |
SINE |
| 131976170 |
131976628 |
+ |
7.8 |
1 |
448 |
-2 |
LTR7 |
ERV1 |
LTR |
| 131976631 |
131980865 |
+ |
18.3 |
1 |
4017 |
-2512 |
HERVH |
ERV1 |
LTR |
| 131980866 |
131981174 |
- |
8.1 |
2 |
311 |
-2 |
AluSp |
Alu |
SINE |
| 131981175 |
131981342 |
+ |
7.9 |
4015 |
4181 |
-2372 |
HERVH |
ERV1 |
LTR |
| 131981337 |
131981734 |
+ |
7.8 |
6283 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131981735 |
131981812 |
+ |
19.2 |
6600 |
6678 |
-1035 |
HERVH |
ERV1 |
LTR |
| 131981815 |
131981895 |
+ |
13.6 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131981896 |
131981976 |
+ |
13.6 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131981977 |
131982057 |
+ |
13.6 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131982058 |
131982138 |
+ |
13.6 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131982139 |
131982216 |
+ |
19.2 |
6600 |
6678 |
-1035 |
HERVH |
ERV1 |
LTR |
| 131982219 |
131982299 |
+ |
13.6 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131982300 |
131982380 |
+ |
14.8 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131982381 |
131982461 |
+ |
16.1 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131982462 |
131982541 |
+ |
18.8 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131982542 |
131982622 |
+ |
13.6 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131982623 |
131982703 |
+ |
16.1 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131982704 |
131982784 |
+ |
16.1 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131982785 |
131982865 |
+ |
13.6 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131982866 |
131982945 |
+ |
17.5 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131982946 |
131983026 |
+ |
14.8 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131983027 |
131983107 |
+ |
12.3 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131983108 |
131983187 |
+ |
15.0 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131983188 |
131983268 |
+ |
14.8 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131983269 |
131983349 |
+ |
16.1 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131983350 |
131983430 |
+ |
14.8 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131983431 |
131983510 |
+ |
11.2 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131983511 |
131983590 |
+ |
12.5 |
6600 |
6680 |
-1033 |
HERVH |
ERV1 |
LTR |
| 131983591 |
131984707 |
+ |
8.5 |
6600 |
7713 |
0 |
HERVH |
ERV1 |
LTR |
| 131984708 |
131985158 |
+ |
6.1 |
1 |
448 |
-2 |
LTR7 |
ERV1 |
LTR |
| 131985161 |
131985407 |
+ |
9.9 |
59 |
301 |
-8 |
AluSg1 |
Alu |
SINE |
| 131985408 |
131985541 |
+ |
17.2 |
765 |
900 |
0 |
MER4D1 |
ERV1 |
LTR |
| chr13:113224343-113230575 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 113224343 |
113224640 |
- |
17.9 |
4279 |
4589 |
-1948 |
L1MDa |
L1 |
LINE |
| 113224674 |
113224955 |
- |
7.6 |
2 |
283 |
-28 |
AluY |
Alu |
SINE |
| 113224957 |
113225245 |
- |
11.8 |
1 |
291 |
-19 |
AluSg |
Alu |
SINE |
| 113225246 |
113226657 |
- |
17.9 |
2793 |
4278 |
-2259 |
L1MDa |
L1 |
LINE |
| 113226658 |
113226951 |
- |
12.3 |
1 |
303 |
-9 |
AluSx |
Alu |
SINE |
| 113226952 |
113227479 |
- |
20.5 |
2230 |
2792 |
-3745 |
L1MDa |
L1 |
LINE |
| 113227487 |
113227905 |
+ |
19.9 |
2 |
434 |
-797 |
Tigger3b |
MER2_type |
DNA |
| 113227902 |
113227952 |
+ |
19.6 |
2177 |
2227 |
-802 |
Tigger3(Golem) |
MER2_type |
DNA |
| 113227953 |
113228007 |
+ |
16.4 |
2177 |
2231 |
-798 |
Tigger3(Golem) |
MER2_type |
DNA |
| 113228004 |
113228058 |
+ |
20.0 |
2177 |
2231 |
-798 |
Tigger3(Golem) |
MER2_type |
DNA |
| 113228106 |
113228160 |
+ |
20.0 |
2177 |
2231 |
-798 |
Tigger3(Golem) |
MER2_type |
DNA |
| 113228208 |
113228262 |
+ |
23.6 |
2177 |
2231 |
-798 |
Tigger3(Golem) |
MER2_type |
DNA |
| 113228263 |
113228313 |
+ |
25.5 |
2182 |
2232 |
-797 |
Tigger3(Golem) |
MER2_type |
DNA |
| 113228310 |
113228356 |
+ |
23.4 |
2177 |
2223 |
-806 |
Tigger3(Golem) |
MER2_type |
DNA |
| 113228361 |
113228753 |
+ |
15.9 |
2177 |
2580 |
-449 |
Tigger3(Golem) |
MER2_type |
DNA |
| 113228754 |
113229035 |
+ |
16.0 |
1 |
283 |
-29 |
AluJo |
Alu |
SINE |
| 113229036 |
113229439 |
+ |
15.9 |
2581 |
3028 |
-1 |
Tigger3(Golem) |
MER2_type |
DNA |
| 113229440 |
113230575 |
- |
27.6 |
1027 |
2223 |
-4410 |
L1MDa |
L1 |
LINE |
| chr17:245915-249940 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 245915 |
246042 |
- |
23.6 |
317 |
468 |
0 |
LTR37B |
ERV1 |
LTR |
| 246183 |
246493 |
+ |
4.9 |
1 |
308 |
-3 |
AluY |
Alu |
SINE |
| 246516 |
247079 |
- |
18.1 |
475 |
1068 |
0 |
Tigger2b_Pri |
MER2_type |
DNA |
| 247080 |
247368 |
- |
17.2 |
9 |
312 |
0 |
AluJo |
Alu |
SINE |
| 247369 |
247528 |
- |
18.1 |
331 |
474 |
-594 |
Tigger2b_Pri |
MER2_type |
DNA |
| 247524 |
247588 |
- |
18.5 |
336 |
404 |
-664 |
Tigger2b_Pri |
MER2_type |
DNA |
| 247589 |
247662 |
- |
18.9 |
331 |
404 |
-664 |
Tigger2b_Pri |
MER2_type |
DNA |
| 247658 |
247726 |
- |
18.8 |
336 |
404 |
-664 |
Tigger2b_Pri |
MER2_type |
DNA |
| 247728 |
247795 |
- |
19.1 |
336 |
403 |
-665 |
Tigger2b_Pri |
MER2_type |
DNA |
| 247796 |
247869 |
- |
18.9 |
331 |
404 |
-664 |
Tigger2b_Pri |
MER2_type |
DNA |
| 247865 |
247938 |
- |
17.6 |
331 |
404 |
-664 |
Tigger2b_Pri |
MER2_type |
DNA |
| 247934 |
248007 |
- |
18.9 |
331 |
404 |
-664 |
Tigger2b_Pri |
MER2_type |
DNA |
| 248003 |
248071 |
- |
17.4 |
336 |
404 |
-664 |
Tigger2b_Pri |
MER2_type |
DNA |
| 248072 |
248145 |
- |
17.6 |
331 |
404 |
-664 |
Tigger2b_Pri |
MER2_type |
DNA |
| 248141 |
248214 |
- |
18.9 |
331 |
404 |
-664 |
Tigger2b_Pri |
MER2_type |
DNA |
| 248210 |
248283 |
- |
17.6 |
331 |
404 |
-664 |
Tigger2b_Pri |
MER2_type |
DNA |
| 248279 |
248352 |
- |
18.9 |
331 |
404 |
-664 |
Tigger2b_Pri |
MER2_type |
DNA |
| 248348 |
248421 |
- |
18.9 |
331 |
404 |
-664 |
Tigger2b_Pri |
MER2_type |
DNA |
| 248417 |
248448 |
- |
18.9 |
377 |
404 |
-664 |
Tigger2b_Pri |
MER2_type |
DNA |
| 248449 |
248756 |
- |
10.8 |
1 |
305 |
-8 |
AluSq |
Alu |
SINE |
| 248757 |
248802 |
- |
18.9 |
331 |
376 |
-692 |
Tigger2b_Pri |
MER2_type |
DNA |
| 248798 |
248995 |
- |
13.8 |
197 |
404 |
-664 |
Tigger2b_Pri |
MER2_type |
DNA |
| 248999 |
249125 |
+ |
22.1 |
2 |
128 |
-15 |
FLAM_C |
Alu |
SINE |
| 249283 |
249492 |
+ |
16.0 |
95 |
291 |
-21 |
AluJo |
Alu |
SINE |
| 249493 |
249686 |
- |
11.9 |
9 |
207 |
-861 |
Tigger2b_Pri |
MER2_type |
DNA |
| 249698 |
249940 |
- |
21.1 |
94 |
304 |
-164 |
LTR37B |
ERV1 |
LTR |
| chr17:5083597-5086174 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 5083597 |
5083760 |
+ |
24.7 |
10 |
177 |
-413 |
MLT1H1 |
MaLR |
LTR |
| 5083764 |
5083856 |
+ |
8.6 |
2 |
94 |
-215 |
AluSg1 |
Alu |
SINE |
| 5083892 |
5084089 |
+ |
21.9 |
25 |
190 |
-274 |
LTR7B |
ERV1 |
LTR |
| 5084187 |
5084255 |
+ |
23.5 |
123 |
190 |
-282 |
LTR7Y |
ERV1 |
LTR |
| 5084229 |
5084295 |
+ |
23.9 |
123 |
190 |
-282 |
LTR7Y |
ERV1 |
LTR |
| 5084310 |
5084378 |
+ |
20.6 |
123 |
190 |
-282 |
LTR7Y |
ERV1 |
LTR |
| 5084394 |
5084462 |
+ |
23.5 |
123 |
190 |
-282 |
LTR7Y |
ERV1 |
LTR |
| 5084477 |
5084549 |
+ |
19.4 |
123 |
189 |
-283 |
LTR7Y |
ERV1 |
LTR |
| 5084519 |
5084586 |
+ |
20.9 |
123 |
190 |
-282 |
LTR7Y |
ERV1 |
LTR |
| 5084628 |
5084710 |
+ |
21.9 |
107 |
190 |
-282 |
LTR7Y |
ERV1 |
LTR |
| 5084752 |
5084834 |
+ |
21.9 |
107 |
190 |
-282 |
LTR7Y |
ERV1 |
LTR |
| 5084891 |
5084959 |
+ |
23.5 |
123 |
190 |
-282 |
LTR7Y |
ERV1 |
LTR |
| 5084933 |
5084999 |
+ |
23.9 |
123 |
190 |
-282 |
LTR7Y |
ERV1 |
LTR |
| 5085014 |
5085085 |
+ |
18.2 |
123 |
189 |
-283 |
LTR7Y |
ERV1 |
LTR |
| 5085082 |
5085205 |
+ |
19.3 |
107 |
190 |
-282 |
LTR7Y |
ERV1 |
LTR |
| 5085220 |
5085600 |
+ |
20.5 |
107 |
464 |
0 |
LTR7B |
ERV1 |
LTR |
| 5085601 |
5085803 |
+ |
8.4 |
93 |
296 |
-16 |
AluSg1 |
Alu |
SINE |
| 5085807 |
5086174 |
+ |
27.1 |
168 |
555 |
0 |
MLT1H1 |
MaLR |
LTR |
| chr18:65578567-65580563 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 65578567 |
65578609 |
+ |
13.9 |
3 |
45 |
-257 |
AluJb |
Alu |
SINE |
| 65578629 |
65578733 |
- |
16.2 |
502 |
600 |
-134 |
MER50 |
ERV1 |
LTR |
| 65578724 |
65579161 |
- |
25.2 |
122 |
563 |
-171 |
MER50 |
ERV1 |
LTR |
| 65579164 |
65579261 |
- |
7.1 |
122 |
222 |
-512 |
MER50 |
ERV1 |
LTR |
| 65579264 |
65579361 |
- |
9.2 |
122 |
222 |
-512 |
MER50 |
ERV1 |
LTR |
| 65579364 |
65579461 |
- |
8.2 |
122 |
222 |
-512 |
MER50 |
ERV1 |
LTR |
| 65579464 |
65579687 |
- |
14.7 |
1 |
222 |
-512 |
MER50 |
ERV1 |
LTR |
| 65579688 |
65580015 |
- |
13.1 |
6882 |
7197 |
-8 |
MER50-int |
ERV1 |
LTR |
| 65580050 |
65580294 |
- |
17.1 |
513 |
734 |
0 |
MER50 |
ERV1 |
LTR |
| 65580295 |
65580361 |
+ |
18.9 |
51 |
133 |
-179 |
AluJb |
Alu |
SINE |
| 65580410 |
65580563 |
+ |
18.9 |
134 |
288 |
-24 |
AluJb |
Alu |
SINE |
| chr19:34325264-34326765 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 34325264 |
34325380 |
- |
23.4 |
1348 |
1469 |
-3 |
MLT1H-int |
MaLR |
LTR |
| 34325586 |
34325865 |
+ |
16.8 |
5854 |
6136 |
-25 |
L1PA17 |
L1 |
LINE |
| 34325840 |
34325880 |
+ |
12.2 |
6084 |
6124 |
-42 |
L1PA17 |
L1 |
LINE |
| 34325880 |
34325917 |
+ |
13.2 |
6086 |
6123 |
-43 |
L1PA17 |
L1 |
LINE |
| 34325918 |
34325956 |
+ |
7.7 |
6086 |
6124 |
-42 |
L1PA17 |
L1 |
LINE |
| 34325986 |
34326034 |
+ |
12.2 |
6076 |
6124 |
-42 |
L1PA17 |
L1 |
LINE |
| 34326034 |
34326071 |
+ |
7.9 |
6086 |
6123 |
-43 |
L1PA17 |
L1 |
LINE |
| 34326100 |
34326152 |
+ |
17.5 |
6074 |
6126 |
-40 |
L1PA16 |
L1 |
LINE |
| 34326187 |
34326225 |
+ |
7.7 |
6086 |
6124 |
-42 |
L1PA17 |
L1 |
LINE |
| 34326225 |
34326263 |
+ |
7.7 |
6086 |
6124 |
-42 |
L1PA17 |
L1 |
LINE |
| 34326263 |
34326301 |
+ |
7.7 |
6086 |
6124 |
-42 |
L1PA17 |
L1 |
LINE |
| 34326329 |
34326377 |
+ |
18.4 |
6076 |
6124 |
-42 |
L1PA17 |
L1 |
LINE |
| 34326407 |
34326483 |
+ |
16.9 |
6076 |
6152 |
-14 |
L1PA17 |
L1 |
LINE |
| 34326613 |
34326765 |
- |
32.2 |
768 |
923 |
-549 |
MLT1H-int |
MaLR |
LTR |
| chr19:63802699-63805611 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 63802699 |
63803145 |
- |
21.6 |
1063 |
1506 |
-3430 |
MER72-int |
ERV1 |
LTR |
| 63803149 |
63803216 |
+ |
22.1 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 63803242 |
63803309 |
+ |
16.2 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 63803335 |
63803402 |
+ |
17.6 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 63803428 |
63803495 |
+ |
22.1 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 63803521 |
63803588 |
+ |
20.6 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 63803614 |
63803681 |
+ |
20.6 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 63803707 |
63803774 |
+ |
17.6 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 63803800 |
63803867 |
+ |
19.1 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 63803893 |
63803960 |
+ |
22.1 |
3 |
72 |
-482 |
MLT2B5 |
ERVL |
LTR |
| 63803986 |
63804210 |
+ |
21.1 |
3 |
274 |
-388 |
MLT2B3 |
ERVL |
LTR |
| 63804211 |
63804572 |
+ |
14.2 |
1 |
375 |
0 |
THE1C |
MaLR |
LTR |
| 63804573 |
63804922 |
+ |
24.0 |
159 |
597 |
-4 |
MLT2B5 |
ERVL |
LTR |
| 63804930 |
63805296 |
- |
27.0 |
620 |
1063 |
-3873 |
MER72-int |
ERV1 |
LTR |
| 63805272 |
63805611 |
- |
26.5 |
173 |
515 |
-4421 |
MER72-int |
ERV1 |
LTR |
| chr20:2370303-2373113 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 2370303 |
2371100 |
+ |
22.8 |
4070 |
4952 |
-1194 |
L1M5 |
L1 |
LINE |
| 2371105 |
2371403 |
+ |
11.0 |
1 |
304 |
-8 |
AluSx |
Alu |
SINE |
| 2371423 |
2371701 |
+ |
22.6 |
1 |
258 |
-194 |
LTR47A |
ERVL |
LTR |
| 2371704 |
2371762 |
+ |
19.6 |
200 |
258 |
-185 |
LTR47B |
ERVL |
LTR |
| 2371765 |
2371823 |
+ |
19.6 |
200 |
258 |
-185 |
LTR47B |
ERVL |
LTR |
| 2371826 |
2371884 |
+ |
19.6 |
200 |
258 |
-185 |
LTR47B |
ERVL |
LTR |
| 2371887 |
2371945 |
+ |
27.1 |
200 |
258 |
-194 |
LTR47A |
ERVL |
LTR |
| 2371948 |
2372006 |
+ |
19.6 |
200 |
258 |
-185 |
LTR47B |
ERVL |
LTR |
| 2372009 |
2372067 |
+ |
19.6 |
200 |
258 |
-185 |
LTR47B |
ERVL |
LTR |
| 2372070 |
2372128 |
+ |
19.6 |
200 |
258 |
-185 |
LTR47B |
ERVL |
LTR |
| 2372131 |
2372189 |
+ |
19.6 |
200 |
258 |
-185 |
LTR47B |
ERVL |
LTR |
| 2372216 |
2372250 |
+ |
17.1 |
224 |
258 |
-194 |
LTR47A |
ERVL |
LTR |
| 2372253 |
2372311 |
+ |
19.6 |
200 |
258 |
-185 |
LTR47B |
ERVL |
LTR |
| 2372314 |
2372372 |
+ |
19.6 |
200 |
258 |
-185 |
LTR47B |
ERVL |
LTR |
| 2372375 |
2372433 |
+ |
19.6 |
200 |
258 |
-185 |
LTR47B |
ERVL |
LTR |
| 2372436 |
2372494 |
+ |
19.6 |
200 |
258 |
-185 |
LTR47B |
ERVL |
LTR |
| 2372505 |
2372740 |
+ |
20.5 |
210 |
443 |
0 |
LTR47B |
ERVL |
LTR |
| 2372742 |
2372780 |
+ |
17.9 |
405 |
443 |
0 |
LTR47B |
ERVL |
LTR |
| 2372781 |
2373113 |
+ |
24.3 |
4962 |
5298 |
-848 |
L1M5 |
L1 |
LINE |
| chr20:55192488-55194895 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 55192488 |
55192620 |
- |
32.6 |
3286 |
3419 |
0 |
L2 |
L2 |
LINE |
| 55192697 |
55192812 |
- |
26.1 |
6 |
133 |
-276 |
MLT1I |
MaLR |
LTR |
| 55192814 |
55193006 |
- |
29.3 |
2938 |
3139 |
-280 |
L2 |
L2 |
LINE |
| 55193062 |
55193427 |
+ |
24.0 |
22 |
478 |
-27 |
MLT1C |
MaLR |
LTR |
| 55193503 |
55193682 |
- |
30.3 |
2629 |
2809 |
-610 |
L2 |
L2 |
LINE |
| 55193692 |
55193847 |
- |
27.6 |
6204 |
6359 |
0 |
L1MD2 |
L1 |
LINE |
| 55193856 |
55194089 |
- |
30.6 |
2396 |
2621 |
-798 |
L2 |
L2 |
LINE |
| 55194199 |
55194262 |
+ |
26.6 |
198 |
261 |
-7 |
MIRb |
MIR |
SINE |
| 55194267 |
55194307 |
+ |
21.9 |
221 |
261 |
-7 |
MIRb |
MIR |
SINE |
| 55194329 |
55194397 |
+ |
24.5 |
185 |
261 |
-6 |
MIRb |
MIR |
SINE |
| 55194402 |
55194442 |
+ |
19.5 |
221 |
261 |
-7 |
MIRb |
MIR |
SINE |
| 55194464 |
55194532 |
+ |
22.6 |
185 |
261 |
-6 |
MIRb |
MIR |
SINE |
| 55194528 |
55194895 |
- |
29.6 |
1999 |
2377 |
-1042 |
L2 |
L2 |
LINE |
| chr21:46935652-46938527 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 46935652 |
46936098 |
- |
21.6 |
1063 |
1506 |
-3430 |
MER34B-int |
ERV1 |
LTR |
| 46936102 |
46936169 |
+ |
22.1 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 46936195 |
46936262 |
+ |
14.7 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 46936288 |
46936355 |
+ |
16.2 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 46936381 |
46936448 |
+ |
22.1 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 46936474 |
46936541 |
+ |
19.1 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 46936567 |
46936632 |
+ |
16.7 |
3 |
72 |
-482 |
MLT2B3 |
ERVL |
LTR |
| 46936658 |
46936725 |
+ |
14.7 |
3 |
72 |
-482 |
MLT2B5 |
ERVL |
LTR |
| 46936751 |
46936977 |
+ |
19.9 |
3 |
279 |
-388 |
MLT2B3 |
ERVL |
LTR |
| 46936978 |
46937339 |
+ |
14.4 |
1 |
375 |
0 |
THE1C |
MaLR |
LTR |
| 46937340 |
46937689 |
+ |
21.8 |
164 |
597 |
-4 |
MLT2B5 |
ERVL |
LTR |
| 46937697 |
46938061 |
- |
27.3 |
620 |
1063 |
-3873 |
MER34B-int |
ERV1 |
LTR |
| 46938037 |
46938374 |
- |
26.9 |
173 |
515 |
-4421 |
MER34B-int |
ERV1 |
LTR |
| 46938416 |
46938527 |
- |
19.2 |
500 |
623 |
-4733 |
MER34B-int |
ERV1 |
LTR |
| chrX:1770724-1778476 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 1770724 |
1770900 |
- |
16.9 |
6101 |
6283 |
-8 |
L1MA8 |
L1 |
LINE |
| 1770905 |
1771205 |
+ |
12.0 |
1 |
301 |
-11 |
AluSx |
Alu |
SINE |
| 1771206 |
1771448 |
+ |
6.2 |
5900 |
6154 |
0 |
L1PA7 |
L1 |
LINE |
| 1771487 |
1771722 |
- |
12.3 |
1 |
236 |
-77 |
AluSq |
Alu |
SINE |
| 1771727 |
1772028 |
- |
7.3 |
1 |
302 |
-9 |
AluY |
Alu |
SINE |
| 1772057 |
1772186 |
+ |
17.6 |
12 |
137 |
-6 |
FLAM_C |
Alu |
SINE |
| 1772288 |
1772591 |
- |
5.6 |
1 |
303 |
-8 |
AluY |
Alu |
SINE |
| 1772593 |
1772762 |
- |
21.2 |
130 |
299 |
-13 |
AluJb |
Alu |
SINE |
| 1772887 |
1772943 |
- |
27.8 |
6098 |
6178 |
-5 |
L1MB3 |
L1 |
LINE |
| 1772944 |
1773078 |
+ |
10.7 |
1 |
135 |
-177 |
AluSx |
Alu |
SINE |
| 1773079 |
1773392 |
+ |
14.5 |
1 |
312 |
0 |
AluSx |
Alu |
SINE |
| 1773393 |
1773558 |
+ |
10.7 |
136 |
298 |
-14 |
AluSx |
Alu |
SINE |
| 1773560 |
1773593 |
- |
22.5 |
6061 |
6094 |
-80 |
L1MB5 |
L1 |
LINE |
| 1773594 |
1773879 |
- |
29.9 |
5767 |
6057 |
-1938 |
L1MD3 |
L1 |
LINE |
| 1773925 |
1774226 |
- |
12.9 |
1 |
303 |
-9 |
AluSx |
Alu |
SINE |
| 1774242 |
1774425 |
- |
16.3 |
6098 |
6286 |
-5 |
L1MA8 |
L1 |
LINE |
| 1774426 |
1774714 |
+ |
12.2 |
1 |
286 |
-26 |
AluSx |
Alu |
SINE |
| 1774736 |
1774811 |
- |
16.3 |
6030 |
6097 |
-194 |
L1MA8 |
L1 |
LINE |
| 1774812 |
1775112 |
- |
10.0 |
1 |
301 |
-10 |
AluY |
Alu |
SINE |
| 1775113 |
1775221 |
- |
16.3 |
5921 |
6029 |
-262 |
L1MA8 |
L1 |
LINE |
| 1775222 |
1775457 |
- |
26.8 |
5703 |
5938 |
-228 |
L1PA16 |
L1 |
LINE |
| 1775458 |
1775577 |
- |
21.2 |
5648 |
5829 |
-355 |
L1MB7 |
L1 |
LINE |
| 1775585 |
1775706 |
- |
20.0 |
5707 |
5828 |
-346 |
L1MB5 |
L1 |
LINE |
| 1775711 |
1775831 |
- |
25.0 |
5711 |
5831 |
-469 |
L1MA5 |
L1 |
LINE |
| 1775821 |
1775966 |
- |
20.5 |
5702 |
5847 |
-309 |
L1MB5 |
L1 |
LINE |
| 1775966 |
1776090 |
- |
20.2 |
5707 |
5831 |
-353 |
L1MB7 |
L1 |
LINE |
| 1776086 |
1776207 |
- |
25.8 |
5707 |
5837 |
-463 |
L1MA5 |
L1 |
LINE |
| 1776212 |
1776332 |
- |
25.0 |
5711 |
5831 |
-469 |
L1MA5 |
L1 |
LINE |
| 1776320 |
1776467 |
- |
21.8 |
5699 |
5846 |
-445 |
L1MB5 |
L1 |
LINE |
| 1776467 |
1776587 |
- |
24.2 |
5711 |
5831 |
-469 |
L1MA5 |
L1 |
LINE |
| 1776577 |
1776722 |
- |
20.5 |
5702 |
5847 |
-309 |
L1MB5 |
L1 |
LINE |
| 1776722 |
1776846 |
- |
19.4 |
5707 |
5831 |
-353 |
L1MB7 |
L1 |
LINE |
| 1776842 |
1776963 |
- |
25.8 |
5707 |
5837 |
-463 |
L1MA5 |
L1 |
LINE |
| 1776968 |
1777088 |
- |
25.0 |
5711 |
5831 |
-469 |
L1MA5 |
L1 |
LINE |
| 1777076 |
1777223 |
- |
20.9 |
5699 |
5846 |
-445 |
L1MB5 |
L1 |
LINE |
| 1777223 |
1777343 |
- |
24.2 |
5711 |
5831 |
-469 |
L1MA5 |
L1 |
LINE |
| 1777333 |
1777478 |
- |
20.5 |
5702 |
5847 |
-309 |
L1MB5 |
L1 |
LINE |
| 1777478 |
1777602 |
- |
20.2 |
5707 |
5831 |
-353 |
L1MB7 |
L1 |
LINE |
| 1777598 |
1777719 |
- |
25.8 |
5707 |
5837 |
-463 |
L1MA5 |
L1 |
LINE |
| 1777724 |
1777844 |
- |
25.0 |
5711 |
5831 |
-469 |
L1MA5 |
L1 |
LINE |
| 1777832 |
1777974 |
- |
20.8 |
5707 |
5846 |
-454 |
L1MB5 |
L1 |
LINE |
| 1777979 |
1778099 |
- |
25.0 |
5711 |
5831 |
-343 |
L1MB5 |
L1 |
LINE |
| 1778089 |
1778224 |
- |
24.6 |
5711 |
5844 |
-461 |
L1MB5 |
L1 |
LINE |
| 1778212 |
1778351 |
- |
25.9 |
5711 |
5846 |
-454 |
L1MA4 |
L1 |
LINE |
| 1778339 |
1778476 |
- |
26.7 |
5707 |
5846 |
-445 |
L1MA8 |
L1 |
LINE |
| chrX:1902319-1906638 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 1902319 |
1902488 |
+ |
21.3 |
1 |
161 |
-306 |
MLT1C |
MaLR |
LTR |
| 1902489 |
1902669 |
- |
24.3 |
179 |
365 |
0 |
MLT1A0 |
MaLR |
LTR |
| 1902707 |
1902766 |
- |
15.0 |
32 |
92 |
-334 |
MLT1A0 |
MaLR |
LTR |
| 1902765 |
1902823 |
- |
16.9 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1902817 |
1902880 |
- |
14.5 |
32 |
95 |
-331 |
MSTB |
MaLR |
LTR |
| 1902881 |
1902937 |
- |
10.5 |
32 |
89 |
-337 |
MSTB |
MaLR |
LTR |
| 1902940 |
1902995 |
- |
19.6 |
32 |
88 |
-338 |
MSTB |
MaLR |
LTR |
| 1902994 |
1903053 |
- |
18.3 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1903047 |
1903105 |
- |
14.0 |
37 |
95 |
-331 |
MSTB |
MaLR |
LTR |
| 1903109 |
1903167 |
- |
11.9 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1903166 |
1903224 |
- |
16.9 |
33 |
92 |
-340 |
MSTB1 |
MaLR |
LTR |
| 1903228 |
1903283 |
- |
14.3 |
32 |
88 |
-338 |
MSTB |
MaLR |
LTR |
| 1903282 |
1903340 |
- |
16.9 |
33 |
92 |
-340 |
MSTB1 |
MaLR |
LTR |
| 1903340 |
1903399 |
- |
15.0 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1903398 |
1903456 |
- |
20.3 |
33 |
92 |
-340 |
MSTB1 |
MaLR |
LTR |
| 1903456 |
1903515 |
- |
16.7 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1903514 |
1903571 |
- |
17.2 |
34 |
92 |
-340 |
MSTB1 |
MaLR |
LTR |
| 1903567 |
1903631 |
- |
12.9 |
31 |
95 |
-331 |
MSTB |
MaLR |
LTR |
| 1903624 |
1903688 |
- |
15.9 |
32 |
95 |
-331 |
MSTB |
MaLR |
LTR |
| 1903687 |
1903746 |
- |
15.0 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1903745 |
1903804 |
- |
18.3 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1903861 |
1903920 |
- |
16.7 |
32 |
92 |
-340 |
MSTB1 |
MaLR |
LTR |
| 1903924 |
1903975 |
- |
15.4 |
35 |
87 |
-339 |
MSTB |
MaLR |
LTR |
| 1903969 |
1904035 |
- |
21.5 |
33 |
98 |
-334 |
MSTB1 |
MaLR |
LTR |
| 1904035 |
1904094 |
- |
21.7 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1904093 |
1904152 |
- |
13.3 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1904151 |
1904210 |
- |
11.7 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1904213 |
1904268 |
- |
17.9 |
32 |
88 |
-338 |
MSTB |
MaLR |
LTR |
| 1904267 |
1904326 |
- |
20.0 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1904325 |
1904383 |
- |
18.6 |
33 |
92 |
-340 |
MSTB1 |
MaLR |
LTR |
| 1904383 |
1904442 |
- |
16.7 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1904441 |
1904500 |
- |
18.3 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1904499 |
1904558 |
- |
15.0 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1904557 |
1904616 |
- |
20.0 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1904615 |
1904674 |
- |
13.3 |
32 |
92 |
-340 |
MSTB1 |
MaLR |
LTR |
| 1904668 |
1904732 |
- |
17.5 |
32 |
95 |
-337 |
MSTB1 |
MaLR |
LTR |
| 1904726 |
1904790 |
- |
11.3 |
32 |
95 |
-331 |
MSTB |
MaLR |
LTR |
| 1904789 |
1904848 |
- |
16.7 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1904847 |
1904906 |
- |
15.0 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1904905 |
1904962 |
- |
17.2 |
34 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1904958 |
1905022 |
- |
19.1 |
32 |
95 |
-331 |
MSTB |
MaLR |
LTR |
| 1905021 |
1905080 |
- |
18.3 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1905083 |
1905138 |
- |
14.3 |
32 |
88 |
-338 |
MSTB |
MaLR |
LTR |
| 1905137 |
1905196 |
- |
16.7 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1905195 |
1905254 |
- |
18.3 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1905253 |
1905312 |
- |
13.3 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1905311 |
1905371 |
- |
15.0 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1905370 |
1905424 |
- |
16.4 |
33 |
92 |
-340 |
MSTB1 |
MaLR |
LTR |
| 1905424 |
1905483 |
- |
16.7 |
32 |
92 |
-340 |
MSTB1 |
MaLR |
LTR |
| 1905477 |
1905541 |
- |
15.9 |
32 |
95 |
-331 |
MSTB |
MaLR |
LTR |
| 1905540 |
1905598 |
- |
15.2 |
33 |
92 |
-340 |
MSTB1 |
MaLR |
LTR |
| 1905598 |
1905657 |
- |
16.7 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1905656 |
1905715 |
- |
20.0 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1905714 |
1905773 |
- |
16.7 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1905772 |
1905832 |
- |
16.4 |
31 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1905830 |
1905893 |
- |
16.4 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1905892 |
1905955 |
- |
16.4 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1905954 |
1906012 |
- |
16.9 |
32 |
92 |
-334 |
MSTB |
MaLR |
LTR |
| 1906016 |
1906072 |
- |
17.5 |
30 |
87 |
-339 |
MSTB |
MaLR |
LTR |
| 1906069 |
1906129 |
- |
17.2 |
34 |
92 |
-340 |
MSTB1 |
MaLR |
LTR |
| 1906125 |
1906186 |
- |
11.7 |
34 |
95 |
-331 |
MSTB |
MaLR |
LTR |
| 1906240 |
1906335 |
- |
13.8 |
1 |
95 |
-331 |
MSTB |
MaLR |
LTR |
| 1906373 |
1906638 |
+ |
25.7 |
157 |
465 |
-2 |
MLT1C |
MaLR |
LTR |
| chrX:1957407-1958538 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 1957407 |
1957484 |
+ |
7.7 |
6073 |
6151 |
-153 |
L1MA2 |
L1 |
LINE |
| 1957485 |
1957526 |
- |
4.8 |
314 |
355 |
0 |
THE1B |
MaLR |
LTR |
| 1957527 |
1957836 |
+ |
10.3 |
1 |
310 |
-2 |
AluSx |
Alu |
SINE |
| 1957837 |
1958188 |
- |
14.3 |
16 |
334 |
-41 |
THE1B |
MaLR |
LTR |
| 1958189 |
1958245 |
- |
10.5 |
16 |
72 |
-292 |
THE1B |
MaLR |
LTR |
| 1958245 |
1958302 |
- |
10.3 |
16 |
73 |
-291 |
THE1B |
MaLR |
LTR |
| 1958302 |
1958358 |
- |
10.5 |
17 |
73 |
-291 |
THE1B |
MaLR |
LTR |
| 1958359 |
1958431 |
- |
12.3 |
1 |
73 |
-291 |
THE1B |
MaLR |
LTR |
| 1958432 |
1958538 |
+ |
9.3 |
6147 |
6253 |
-51 |
L1MA2 |
L1 |
LINE |
| chrX:82837600-82852732 |
| Genome Start | Genome End | Strand | Div | Repeat Start | Repeat End | Repeat Left | Name | Family | Class |
| 82837600 |
82838654 |
- |
20.4 |
3197 |
4481 |
-2364 |
L1M2 |
L1 |
LINE |
| 82838698 |
82839189 |
- |
21.8 |
2691 |
3196 |
-3649 |
L1M2 |
L1 |
LINE |
| 82839301 |
82839586 |
- |
13.4 |
5851 |
6149 |
-2 |
L1PB1 |
L1 |
LINE |
| 82839622 |
82839651 |
- |
10.0 |
5851 |
5880 |
-276 |
L1PB1 |
L1 |
LINE |
| 82839636 |
82839683 |
- |
8.3 |
5851 |
5902 |
-249 |
L1PB1 |
L1 |
LINE |
| 82839668 |
82839715 |
- |
8.3 |
5851 |
5902 |
-249 |
L1PB1 |
L1 |
LINE |
| 82839700 |
82839747 |
- |
8.3 |
5851 |
5902 |
-249 |
L1PB1 |
L1 |
LINE |
| 82839732 |
82839779 |
- |
8.3 |
5851 |
5902 |
-249 |
L1PB1 |
L1 |
LINE |
| 82839764 |
82839811 |
- |
8.3 |
5851 |
5902 |
-249 |
L1PB1 |
L1 |
LINE |
| 82839796 |
82839936 |
- |
12.9 |
5783 |
5902 |
-249 |
L1PB1 |
L1 |
LINE |
| 82840027 |
82841089 |
- |
11.8 |
4706 |
5782 |
-369 |
L1PB1 |
L1 |
LINE |
| 82841221 |
82841409 |
- |
27.5 |
1672 |
1937 |
-4445 |
L1M4c |
L1 |
LINE |
| 82841398 |
82843795 |
- |
16.5 |
3790 |
6164 |
-1 |
L1PA15 |
L1 |
LINE |
| 82843796 |
82844050 |
- |
9.8 |
1 |
301 |
-10 |
AluY |
Alu |
SINE |
| 82844051 |
82844637 |
- |
17.2 |
3359 |
3993 |
-2357 |
L1M2 |
L1 |
LINE |
| 82844623 |
82844989 |
- |
29.0 |
1685 |
2053 |
-4298 |
L1M2 |
L1 |
LINE |
| 82844997 |
82846132 |
- |
17.4 |
5740 |
6865 |
-5 |
L1PB3 |
L1 |
LINE |
| 82846133 |
82846513 |
- |
17.1 |
1 |
381 |
0 |
THE1D |
MaLR |
LTR |
| 82846514 |
82850279 |
- |
19.6 |
2013 |
5739 |
-1123 |
L1PB3 |
L1 |
LINE |
| 82850298 |
82850740 |
- |
33.6 |
142 |
595 |
-6268 |
L1PB3 |
L1 |
LINE |
| 82850789 |
82851902 |
- |
29.2 |
602 |
1709 |
-4572 |
L1M2 |
L1 |
LINE |
| 82851878 |
82852732 |
- |
30.8 |
3 |
759 |
-5537 |
L1M2 |
L1 |
LINE |
|