|
Home Publications Images Transposon Analysis 
|
Evolutionary History of Mammalian Transposons Determined by Genome-wide Defragmentation Manuscript (updated 24 June, 2007) Figures Figure 1 Figure 2 Figure 3 Figure 4 Figure 5 Figure 5 as an Excel file (Figure S2) Table 1 Supporting Information Figure S1: Representative Clusters Table S1: Statistics of All 908 TEs in the Human Genome Table S2: Chronological Order of 360 Well-Connected TEs Table S3: TCF Results for Seven Mammalian Genomes Table S4: Comparisons of IMA Results for Seven Mammalian Genomes Table S5: TCF and IMA Results for Seven Mammalian Genomes Data Set 1: Intact LTR Elements Data Set 2: L1 5' Inversions Data Set 3: Tandem Repeats Data Set 4: Large Tandem Arrays Data Set 5: Segmental Duplications Custom Track To load the custom track into the UCSC Genome Browser, click here. The custom track must be loaded in order to view the clusters in Data Sets 1 through 5. It may take a minute to load, so please be patient. TCF: Transposon Cluster Finder You may download binary executables of the software that was used to generate the above data. Documentation (included with binary distributions): readme.txt You can use the Interruption Matrix Analysis to process the output of TCF and obtain a chronological ordering of the transposons. |